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G4Hunter web application: a web server for G-quadruplex prediction
MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748775/ https://www.ncbi.nlm.nih.gov/pubmed/30721922 http://dx.doi.org/10.1093/bioinformatics/btz087 |
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author | Brázda, Václav Kolomazník, Jan Lýsek, Jiří Bartas, Martin Fojta, Miroslav Šťastný, Jiří Mergny, Jean-Louis |
author_facet | Brázda, Václav Kolomazník, Jan Lýsek, Jiří Bartas, Martin Fojta, Miroslav Šťastný, Jiří Mergny, Jean-Louis |
author_sort | Brázda, Václav |
collection | PubMed |
description | MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-6748775 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-67487752019-09-23 G4Hunter web application: a web server for G-quadruplex prediction Brázda, Václav Kolomazník, Jan Lýsek, Jiří Bartas, Martin Fojta, Miroslav Šťastný, Jiří Mergny, Jean-Louis Bioinformatics Applications Notes MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-09-15 2019-02-05 /pmc/articles/PMC6748775/ /pubmed/30721922 http://dx.doi.org/10.1093/bioinformatics/btz087 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Applications Notes Brázda, Václav Kolomazník, Jan Lýsek, Jiří Bartas, Martin Fojta, Miroslav Šťastný, Jiří Mergny, Jean-Louis G4Hunter web application: a web server for G-quadruplex prediction |
title | G4Hunter web application: a web server for G-quadruplex prediction |
title_full | G4Hunter web application: a web server for G-quadruplex prediction |
title_fullStr | G4Hunter web application: a web server for G-quadruplex prediction |
title_full_unstemmed | G4Hunter web application: a web server for G-quadruplex prediction |
title_short | G4Hunter web application: a web server for G-quadruplex prediction |
title_sort | g4hunter web application: a web server for g-quadruplex prediction |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748775/ https://www.ncbi.nlm.nih.gov/pubmed/30721922 http://dx.doi.org/10.1093/bioinformatics/btz087 |
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