Cargando…

G4Hunter web application: a web server for G-quadruplex prediction

MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based...

Descripción completa

Detalles Bibliográficos
Autores principales: Brázda, Václav, Kolomazník, Jan, Lýsek, Jiří, Bartas, Martin, Fojta, Miroslav, Šťastný, Jiří, Mergny, Jean-Louis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748775/
https://www.ncbi.nlm.nih.gov/pubmed/30721922
http://dx.doi.org/10.1093/bioinformatics/btz087
_version_ 1783452147332939776
author Brázda, Václav
Kolomazník, Jan
Lýsek, Jiří
Bartas, Martin
Fojta, Miroslav
Šťastný, Jiří
Mergny, Jean-Louis
author_facet Brázda, Václav
Kolomazník, Jan
Lýsek, Jiří
Bartas, Martin
Fojta, Miroslav
Šťastný, Jiří
Mergny, Jean-Louis
author_sort Brázda, Václav
collection PubMed
description MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
format Online
Article
Text
id pubmed-6748775
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-67487752019-09-23 G4Hunter web application: a web server for G-quadruplex prediction Brázda, Václav Kolomazník, Jan Lýsek, Jiří Bartas, Martin Fojta, Miroslav Šťastný, Jiří Mergny, Jean-Louis Bioinformatics Applications Notes MOTIVATION: Expanding research highlights the importance of guanine quadruplex structures. Therefore, easy-accessible tools for quadruplex analyses in DNA and RNA molecules are important for the scientific community. RESULTS: We developed a web version of the G4Hunter application. This new web-based server is a platform-independent and user-friendly application for quadruplex analyses. It allows retrieval of gene/nucleotide sequence entries from NCBI databases and provides complete characterization of localization and quadruplex propensity of quadruplex-forming sequences. The G4Hunter web application includes an interactive graphical data representation with many useful options including visualization, sorting, data storage and export. AVAILABILITY AND IMPLEMENTATION: G4Hunter web application can be accessed at: http://bioinformatics.ibp.cz. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-09-15 2019-02-05 /pmc/articles/PMC6748775/ /pubmed/30721922 http://dx.doi.org/10.1093/bioinformatics/btz087 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Brázda, Václav
Kolomazník, Jan
Lýsek, Jiří
Bartas, Martin
Fojta, Miroslav
Šťastný, Jiří
Mergny, Jean-Louis
G4Hunter web application: a web server for G-quadruplex prediction
title G4Hunter web application: a web server for G-quadruplex prediction
title_full G4Hunter web application: a web server for G-quadruplex prediction
title_fullStr G4Hunter web application: a web server for G-quadruplex prediction
title_full_unstemmed G4Hunter web application: a web server for G-quadruplex prediction
title_short G4Hunter web application: a web server for G-quadruplex prediction
title_sort g4hunter web application: a web server for g-quadruplex prediction
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6748775/
https://www.ncbi.nlm.nih.gov/pubmed/30721922
http://dx.doi.org/10.1093/bioinformatics/btz087
work_keys_str_mv AT brazdavaclav g4hunterwebapplicationawebserverforgquadruplexprediction
AT kolomaznikjan g4hunterwebapplicationawebserverforgquadruplexprediction
AT lysekjiri g4hunterwebapplicationawebserverforgquadruplexprediction
AT bartasmartin g4hunterwebapplicationawebserverforgquadruplexprediction
AT fojtamiroslav g4hunterwebapplicationawebserverforgquadruplexprediction
AT stastnyjiri g4hunterwebapplicationawebserverforgquadruplexprediction
AT mergnyjeanlouis g4hunterwebapplicationawebserverforgquadruplexprediction