Cargando…
Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients
Radiomics studies require many patients in order to power them, thus patients are often combined from different institutions and using different imaging protocols. Various studies have shown that imaging protocols affect radiomics feature values. We examined whether using data from cohorts with cont...
Autores principales: | , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6752873/ https://www.ncbi.nlm.nih.gov/pubmed/31536526 http://dx.doi.org/10.1371/journal.pone.0222509 |
_version_ | 1783452804687331328 |
---|---|
author | Ger, Rachel B. Zhou, Shouhao Elgohari, Baher Elhalawani, Hesham Mackin, Dennis M. Meier, Joseph G. Nguyen, Callistus M. Anderson, Brian M. Gay, Casey Ning, Jing Fuller, Clifton D. Li, Heng Howell, Rebecca M. Layman, Rick R. Mawlawi, Osama Stafford, R. Jason Aerts, Hugo Court, Laurence E. |
author_facet | Ger, Rachel B. Zhou, Shouhao Elgohari, Baher Elhalawani, Hesham Mackin, Dennis M. Meier, Joseph G. Nguyen, Callistus M. Anderson, Brian M. Gay, Casey Ning, Jing Fuller, Clifton D. Li, Heng Howell, Rebecca M. Layman, Rick R. Mawlawi, Osama Stafford, R. Jason Aerts, Hugo Court, Laurence E. |
author_sort | Ger, Rachel B. |
collection | PubMed |
description | Radiomics studies require many patients in order to power them, thus patients are often combined from different institutions and using different imaging protocols. Various studies have shown that imaging protocols affect radiomics feature values. We examined whether using data from cohorts with controlled imaging protocols improved patient outcome models. We retrospectively reviewed 726 CT and 686 PET images from head and neck cancer patients, who were divided into training or independent testing cohorts. For each patient, radiomics features with different preprocessing were calculated and two clinical variables—HPV status and tumor volume—were also included. A Cox proportional hazards model was built on the training data by using bootstrapped Lasso regression to predict overall survival. The effect of controlled imaging protocols on model performance was evaluated by subsetting the original training and independent testing cohorts to include only patients whose images were obtained using the same imaging protocol and vendor. Tumor volume, HPV status, and two radiomics covariates were selected for the CT model, resulting in an AUC of 0.72. However, volume alone produced a higher AUC, whereas adding radiomics features reduced the AUC. HPV status and one radiomics feature were selected as covariates for the PET model, resulting in an AUC of 0.59, but neither covariate was significantly associated with survival. Limiting the training and independent testing to patients with the same imaging protocol reduced the AUC for CT patients to 0.55, and no covariates were selected for PET patients. Radiomics features were not consistently associated with survival in CT or PET images of head and neck patients, even within patients with the same imaging protocol. |
format | Online Article Text |
id | pubmed-6752873 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-67528732019-09-27 Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients Ger, Rachel B. Zhou, Shouhao Elgohari, Baher Elhalawani, Hesham Mackin, Dennis M. Meier, Joseph G. Nguyen, Callistus M. Anderson, Brian M. Gay, Casey Ning, Jing Fuller, Clifton D. Li, Heng Howell, Rebecca M. Layman, Rick R. Mawlawi, Osama Stafford, R. Jason Aerts, Hugo Court, Laurence E. PLoS One Research Article Radiomics studies require many patients in order to power them, thus patients are often combined from different institutions and using different imaging protocols. Various studies have shown that imaging protocols affect radiomics feature values. We examined whether using data from cohorts with controlled imaging protocols improved patient outcome models. We retrospectively reviewed 726 CT and 686 PET images from head and neck cancer patients, who were divided into training or independent testing cohorts. For each patient, radiomics features with different preprocessing were calculated and two clinical variables—HPV status and tumor volume—were also included. A Cox proportional hazards model was built on the training data by using bootstrapped Lasso regression to predict overall survival. The effect of controlled imaging protocols on model performance was evaluated by subsetting the original training and independent testing cohorts to include only patients whose images were obtained using the same imaging protocol and vendor. Tumor volume, HPV status, and two radiomics covariates were selected for the CT model, resulting in an AUC of 0.72. However, volume alone produced a higher AUC, whereas adding radiomics features reduced the AUC. HPV status and one radiomics feature were selected as covariates for the PET model, resulting in an AUC of 0.59, but neither covariate was significantly associated with survival. Limiting the training and independent testing to patients with the same imaging protocol reduced the AUC for CT patients to 0.55, and no covariates were selected for PET patients. Radiomics features were not consistently associated with survival in CT or PET images of head and neck patients, even within patients with the same imaging protocol. Public Library of Science 2019-09-19 /pmc/articles/PMC6752873/ /pubmed/31536526 http://dx.doi.org/10.1371/journal.pone.0222509 Text en © 2019 Ger et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ger, Rachel B. Zhou, Shouhao Elgohari, Baher Elhalawani, Hesham Mackin, Dennis M. Meier, Joseph G. Nguyen, Callistus M. Anderson, Brian M. Gay, Casey Ning, Jing Fuller, Clifton D. Li, Heng Howell, Rebecca M. Layman, Rick R. Mawlawi, Osama Stafford, R. Jason Aerts, Hugo Court, Laurence E. Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients |
title | Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients |
title_full | Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients |
title_fullStr | Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients |
title_full_unstemmed | Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients |
title_short | Radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of CT- and PET-imaged head and neck cancer patients |
title_sort | radiomics features of the primary tumor fail to improve prediction of overall survival in large cohorts of ct- and pet-imaged head and neck cancer patients |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6752873/ https://www.ncbi.nlm.nih.gov/pubmed/31536526 http://dx.doi.org/10.1371/journal.pone.0222509 |
work_keys_str_mv | AT gerrachelb radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT zhoushouhao radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT elgoharibaher radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT elhalawanihesham radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT mackindennism radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT meierjosephg radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT nguyencallistusm radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT andersonbrianm radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT gaycasey radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT ningjing radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT fullercliftond radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT liheng radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT howellrebeccam radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT laymanrickr radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT mawlawiosama radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT staffordrjason radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT aertshugo radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients AT courtlaurencee radiomicsfeaturesoftheprimarytumorfailtoimprovepredictionofoverallsurvivalinlargecohortsofctandpetimagedheadandneckcancerpatients |