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PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens

Sepsis is an acute, often fatal syndrome that requires early diagnosis and proper treatment. Blood culture (BC) is the gold standard for the identification of pathogens, however it has marked limitations, including that it is time-consuming (delaying treatment) and can only detect microbes that read...

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Autores principales: Trung, Ngo Tat, Thau, Nguyen Sy, Bang, Mai Hong, Song, Le Huu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6754458/
https://www.ncbi.nlm.nih.gov/pubmed/31541157
http://dx.doi.org/10.1038/s41598-019-50150-y
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author Trung, Ngo Tat
Thau, Nguyen Sy
Bang, Mai Hong
Song, Le Huu
author_facet Trung, Ngo Tat
Thau, Nguyen Sy
Bang, Mai Hong
Song, Le Huu
author_sort Trung, Ngo Tat
collection PubMed
description Sepsis is an acute, often fatal syndrome that requires early diagnosis and proper treatment. Blood culture (BC) is the gold standard for the identification of pathogens, however it has marked limitations, including that it is time-consuming (delaying treatment) and can only detect microbes that readily grow under culture conditions. Alternatively, non-culture-based methodologies like polymerase chain reaction (PCR) are faster but also have limitations; e.g., the reaction is often inhibited by the abundance of human DNA and thus can only detect limited known target pathogens. In our previous publication, we have demonstrated a proof-of-concept of a simple pre-analytical tool to remove human DNA from patients’ blood specimens, hence allowing downstream PCRs to detect rare bacterial genetic materials. In the current study, we reported a better performance of a novel prototype diagnosis kit named Sepsis@Quick that combines human DNA removal step with real-time PCRs compared to blood-culture for identifying sepsis causative bacteria. Our data showed that Sepsis@Quick is superior to blood culture in which the novel diagnostic kit could identify more pathogens and even polymicrobial infection, faster and less influenced by the empirical administration of broad spectrum antibiotic therapy (single administration or combination of cephalosporin III and fluoroquinolon). Additionally, for the first time, we demonstrated that positive results achieved by Sepsis@Quick are significantly associated with a reduction of sepsis-related mortality.
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spelling pubmed-67544582019-10-02 PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens Trung, Ngo Tat Thau, Nguyen Sy Bang, Mai Hong Song, Le Huu Sci Rep Article Sepsis is an acute, often fatal syndrome that requires early diagnosis and proper treatment. Blood culture (BC) is the gold standard for the identification of pathogens, however it has marked limitations, including that it is time-consuming (delaying treatment) and can only detect microbes that readily grow under culture conditions. Alternatively, non-culture-based methodologies like polymerase chain reaction (PCR) are faster but also have limitations; e.g., the reaction is often inhibited by the abundance of human DNA and thus can only detect limited known target pathogens. In our previous publication, we have demonstrated a proof-of-concept of a simple pre-analytical tool to remove human DNA from patients’ blood specimens, hence allowing downstream PCRs to detect rare bacterial genetic materials. In the current study, we reported a better performance of a novel prototype diagnosis kit named Sepsis@Quick that combines human DNA removal step with real-time PCRs compared to blood-culture for identifying sepsis causative bacteria. Our data showed that Sepsis@Quick is superior to blood culture in which the novel diagnostic kit could identify more pathogens and even polymicrobial infection, faster and less influenced by the empirical administration of broad spectrum antibiotic therapy (single administration or combination of cephalosporin III and fluoroquinolon). Additionally, for the first time, we demonstrated that positive results achieved by Sepsis@Quick are significantly associated with a reduction of sepsis-related mortality. Nature Publishing Group UK 2019-09-20 /pmc/articles/PMC6754458/ /pubmed/31541157 http://dx.doi.org/10.1038/s41598-019-50150-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Trung, Ngo Tat
Thau, Nguyen Sy
Bang, Mai Hong
Song, Le Huu
PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
title PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
title_full PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
title_fullStr PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
title_full_unstemmed PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
title_short PCR-based Sepsis@Quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
title_sort pcr-based sepsis@quick test is superior in comparison with blood culture for identification of sepsis-causative pathogens
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6754458/
https://www.ncbi.nlm.nih.gov/pubmed/31541157
http://dx.doi.org/10.1038/s41598-019-50150-y
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