Cargando…

SIA: a scalable interoperable annotation server for biomedical named entities

Recent years showed a strong increase in biomedical sciences and an inherent increase in publication volume. Extraction of specific information from these sources requires highly sophisticated text mining and information extraction tools. However, the integration of freely available tools into custo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kirschnick, Johannes, Thomas, Philippe, Roller, Roland, Hennig, Leonhard
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Springer International Publishing 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6755617/ https://www.ncbi.nlm.nih.gov/pubmed/30552534 http://dx.doi.org/10.1186/s13321-018-0319-2

Ejemplares similares

Sintero server scalable interoperability framework for DALLAS communities
por: Conley, Ed, et al.
Publicado: (2012)

MER: a shell script and annotation server for minimal named entity recognition and linking
por: Couto, Francisco M., et al.
Publicado: (2018)

NEREL-BIO: a dataset of biomedical abstracts annotated with nested named entities
por: Loukachevitch, Natalia, et al.
Publicado: (2023)

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm
por: Pérez-Pérez, Martin, et al.
Publicado: (2019)

Comparison of named entity recognition methodologies in biomedical documents
por: Song, Hye-Jeong, et al.
Publicado: (2018)

Distinguishing the species of biomedical named entities for term identification
por: Wang, Xinglong, et al.
Publicado: (2008)

Various criteria in the evaluation of biomedical named entity recognition
por: Tsai, Richard Tzong-Han, et al.
Publicado: (2006)

Towards reliable named entity recognition in the biomedical domain
por: Giorgi, John M, et al.
Publicado: (2020)

Improving biomedical named entity recognition with syntactic information
por: Tian, Yuanhe, et al.
Publicado: (2020)

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?
Publicado: (2022)

Transfer learning for biomedical named entity recognition with neural networks
por: Giorgi, John M, et al.
Publicado: (2018)

Biomedical named entity extraction: some issues of corpus compatibilities
por: Ekbal, Asif, et al.
Publicado: (2013)

A Kernel-Based Approach for Biomedical Named Entity Recognition
por: Patra, Rakesh, et al.
Publicado: (2013)

Named Entity Recognition and Relation Detection for Biomedical Information Extraction
por: Perera, Nadeesha, et al.
Publicado: (2020)

Hierarchical shared transfer learning for biomedical named entity recognition
por: Chai, Zhaoying, et al.
Publicado: (2022)

Accelerating the annotation of sparse named entities by dynamic sentence selection
por: Tsuruoka, Yoshimasa, et al.
Publicado: (2008)

A Chinese telemedicine-dialogue dataset annotated for named entities
por: Wang, Shanshan, et al.
Publicado: (2023)

An active learning-enabled annotation system for clinical named entity recognition
por: Chen, Yukun, et al.
Publicado: (2017)

pubmedKB: an interactive web server for exploring biomedical entity relations in the biomedical literature
por: Li, Peng-Hsuan, et al.
Publicado: (2022)

Improving deep learning method for biomedical named entity recognition by using entity definition information
por: Xiong, Ying, et al.
Publicado: (2021)

Disambiguating the species of biomedical named entities using natural language parsers
por: Wang, Xinglong, et al.
Publicado: (2010)

Evaluating Word Representation Features in Biomedical Named Entity Recognition Tasks
por: Tang, Buzhou, et al.
Publicado: (2014)

Using Ontology Fingerprints to disambiguate gene name entities in the biomedical literature
por: Chen, Guocai, et al.
Publicado: (2015)

Deep learning with word embeddings improves biomedical named entity recognition
por: Habibi, Maryam, et al.
Publicado: (2017)

Long short-term memory RNN for biomedical named entity recognition
por: Lyu, Chen, et al.
Publicado: (2017)

Multitask learning for biomedical named entity recognition with cross-sharing structure
por: Wang, Xi, et al.
Publicado: (2019)

Comparing general and specialized word embeddings for biomedical named entity recognition
por: Ramos-Vargas, Rigo E., et al.
Publicado: (2021)

Leveraging network analysis to evaluate biomedical named entity recognition tools
por: García del Valle, Eduardo P., et al.
Publicado: (2021)

Biomedical named entity recognition based on fusion multi-features embedding
por: Li, Meijing, et al.
Publicado: (2023)

Assessment of disease named entity recognition on a corpus of annotated sentences
por: Jimeno, Antonio, et al.
Publicado: (2008)

DarNERcorp: An annotated named entity recognition dataset in the Moroccan dialect
por: Moussa, Hanane Nour, et al.
Publicado: (2023)

An adaptive annotation approach for biomedical entity and relation recognition
por: Yimam, Seid Muhie, et al.
Publicado: (2016)

Interoperable and scalable data analysis with microservices: applications in metabolomics
por: Emami Khoonsari, Payam, et al.
Publicado: (2019)

BEERE: a web server for biomedical entity expansion, ranking and explorations
por: Yue, Zongliang, et al.
Publicado: (2019)

NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding
por: Wang, Kanix, et al.
Publicado: (2021)

Exploiting and assessing multi-source data for supervised biomedical named entity recognition
por: Galea, Dieter, et al.
Publicado: (2018)

Incorporating domain knowledge in chemical and biomedical named entity recognition with word representations
por: Munkhdalai, Tsendsuren, et al.
Publicado: (2015)

A method for named entity normalization in biomedical articles: application to diseases and plants
por: Cho, Hyejin, et al.
Publicado: (2017)

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition
por: Yoon, Wonjin, et al.
Publicado: (2019)

Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes
por: Zhou, Huiwei, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_25pj26e8po1dkbv4lcmkhoanhi