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Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules

In this study, we evaluated the diagnostic value and molecular characteristics of plasma extracellular vesicles (EVs)-derived miRNAs for patients with solitary pulmonary nodules (SPNs), particularly ground-glass nodules (GGNs). This study was registered at www.clinicaltrials.gov under registration n...

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Autores principales: Zhang, Jia-Tao, Qin, Hao, Man Cheung, Fiona Ka, Su, Jian, Zhang, Da-Dong, Liu, Shi-Yi, Li, Xiao-Fang, Qin, Jing, Lin, Jun-Tao, Jiang, Ben-Yuan, Song Dong, Liao, Ri-Qiang, Qiang, Nie, Yang, Xue-Ning, Tu, Hai-Yan, Zhou, Qing, Yang, Jin-Ji, Zhang, Xu-Chao, Zhang, Ya-Nan, Wu, Yi-Long, Zhong, Wen-Zhao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6758624/
https://www.ncbi.nlm.nih.gov/pubmed/31579436
http://dx.doi.org/10.1080/20013078.2019.1663666
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author Zhang, Jia-Tao
Qin, Hao
Man Cheung, Fiona Ka
Su, Jian
Zhang, Da-Dong
Liu, Shi-Yi
Li, Xiao-Fang
Qin, Jing
Lin, Jun-Tao
Jiang, Ben-Yuan
Song Dong,
Liao, Ri-Qiang
Qiang, Nie
Yang, Xue-Ning
Tu, Hai-Yan
Zhou, Qing
Yang, Jin-Ji
Zhang, Xu-Chao
Zhang, Ya-Nan
Wu, Yi-Long
Zhong, Wen-Zhao
author_facet Zhang, Jia-Tao
Qin, Hao
Man Cheung, Fiona Ka
Su, Jian
Zhang, Da-Dong
Liu, Shi-Yi
Li, Xiao-Fang
Qin, Jing
Lin, Jun-Tao
Jiang, Ben-Yuan
Song Dong,
Liao, Ri-Qiang
Qiang, Nie
Yang, Xue-Ning
Tu, Hai-Yan
Zhou, Qing
Yang, Jin-Ji
Zhang, Xu-Chao
Zhang, Ya-Nan
Wu, Yi-Long
Zhong, Wen-Zhao
author_sort Zhang, Jia-Tao
collection PubMed
description In this study, we evaluated the diagnostic value and molecular characteristics of plasma extracellular vesicles (EVs)-derived miRNAs for patients with solitary pulmonary nodules (SPNs), particularly ground-glass nodules (GGNs). This study was registered at www.clinicaltrials.gov under registration number NCT03230019. Small RNA sequencing was performed to assess plasma EVs miRNAs in 59 patients, including 12 patients with benign nodules (2017, training set). MiRNA profiles of 40 an additional individuals were sequenced (2018, validation set). Overall, 16 pure GGNs, 21 mixed GGNs, and 42 solid nodules were included, with paired post-operative plasma samples available for 20 patients. The target miRNA/reference miRNA ratio was used to construct a support vector machine (SVM) model. The SVM model with the best specificity showed 100% specificity in both the training and validation sets independently. The model with the best sensitivity showed 100% and 96.9% sensitivity in the training and validation sets, respectively. Principal component analysis revealed that pure GGN distributions were distinct from those of solid nodules, and mixed GGNs had a diffuse distribution. Among differentially expressed miRNAs, miR-500a-3p, miR-501-3p, and miR-502-3p were upregulated in tumor tissues and enhanced overall survival. The SVM classifier accurately distinguished malignant GGNs and benign nodules. The distinct profile characteristics of miRNAs provided insights into the feasibility of EVs miRNAs as prognostic factors in lung cancer.
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spelling pubmed-67586242019-10-02 Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules Zhang, Jia-Tao Qin, Hao Man Cheung, Fiona Ka Su, Jian Zhang, Da-Dong Liu, Shi-Yi Li, Xiao-Fang Qin, Jing Lin, Jun-Tao Jiang, Ben-Yuan Song Dong, Liao, Ri-Qiang Qiang, Nie Yang, Xue-Ning Tu, Hai-Yan Zhou, Qing Yang, Jin-Ji Zhang, Xu-Chao Zhang, Ya-Nan Wu, Yi-Long Zhong, Wen-Zhao J Extracell Vesicles Research Article In this study, we evaluated the diagnostic value and molecular characteristics of plasma extracellular vesicles (EVs)-derived miRNAs for patients with solitary pulmonary nodules (SPNs), particularly ground-glass nodules (GGNs). This study was registered at www.clinicaltrials.gov under registration number NCT03230019. Small RNA sequencing was performed to assess plasma EVs miRNAs in 59 patients, including 12 patients with benign nodules (2017, training set). MiRNA profiles of 40 an additional individuals were sequenced (2018, validation set). Overall, 16 pure GGNs, 21 mixed GGNs, and 42 solid nodules were included, with paired post-operative plasma samples available for 20 patients. The target miRNA/reference miRNA ratio was used to construct a support vector machine (SVM) model. The SVM model with the best specificity showed 100% specificity in both the training and validation sets independently. The model with the best sensitivity showed 100% and 96.9% sensitivity in the training and validation sets, respectively. Principal component analysis revealed that pure GGN distributions were distinct from those of solid nodules, and mixed GGNs had a diffuse distribution. Among differentially expressed miRNAs, miR-500a-3p, miR-501-3p, and miR-502-3p were upregulated in tumor tissues and enhanced overall survival. The SVM classifier accurately distinguished malignant GGNs and benign nodules. The distinct profile characteristics of miRNAs provided insights into the feasibility of EVs miRNAs as prognostic factors in lung cancer. Taylor & Francis 2019-09-18 /pmc/articles/PMC6758624/ /pubmed/31579436 http://dx.doi.org/10.1080/20013078.2019.1663666 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group on behalf of The International Society for Extracellular Vesicles. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhang, Jia-Tao
Qin, Hao
Man Cheung, Fiona Ka
Su, Jian
Zhang, Da-Dong
Liu, Shi-Yi
Li, Xiao-Fang
Qin, Jing
Lin, Jun-Tao
Jiang, Ben-Yuan
Song Dong,
Liao, Ri-Qiang
Qiang, Nie
Yang, Xue-Ning
Tu, Hai-Yan
Zhou, Qing
Yang, Jin-Ji
Zhang, Xu-Chao
Zhang, Ya-Nan
Wu, Yi-Long
Zhong, Wen-Zhao
Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules
title Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules
title_full Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules
title_fullStr Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules
title_full_unstemmed Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules
title_short Plasma extracellular vesicle microRNAs for pulmonary ground-glass nodules
title_sort plasma extracellular vesicle micrornas for pulmonary ground-glass nodules
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6758624/
https://www.ncbi.nlm.nih.gov/pubmed/31579436
http://dx.doi.org/10.1080/20013078.2019.1663666
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