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Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation

PURPOSE: NODDI is widely used in parameterizing microstructural brain properties. The model includes three signal compartments: intracellular, extracellular, and free water. The neurite compartment intrinsic parallel diffusivity (d(∥)) is set to 1.7 μm(2)⋅ms(−1), though the effects of this assumptio...

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Autores principales: Guerrero, Jose M., Adluru, Nagesh, Bendlin, Barbara B., Goldsmith, H. Hill, Schaefer, Stacey M., Davidson, Richard J., Kecskemeti, Steven R., Zhang, Hui, Alexander, Andrew L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760776/
https://www.ncbi.nlm.nih.gov/pubmed/31553719
http://dx.doi.org/10.1371/journal.pone.0217118
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author Guerrero, Jose M.
Adluru, Nagesh
Bendlin, Barbara B.
Goldsmith, H. Hill
Schaefer, Stacey M.
Davidson, Richard J.
Kecskemeti, Steven R.
Zhang, Hui
Alexander, Andrew L.
author_facet Guerrero, Jose M.
Adluru, Nagesh
Bendlin, Barbara B.
Goldsmith, H. Hill
Schaefer, Stacey M.
Davidson, Richard J.
Kecskemeti, Steven R.
Zhang, Hui
Alexander, Andrew L.
author_sort Guerrero, Jose M.
collection PubMed
description PURPOSE: NODDI is widely used in parameterizing microstructural brain properties. The model includes three signal compartments: intracellular, extracellular, and free water. The neurite compartment intrinsic parallel diffusivity (d(∥)) is set to 1.7 μm(2)⋅ms(−1), though the effects of this assumption have not been extensively explored. This work investigates the optimality of d(∥) = 1.7 μm(2)⋅ms(−1) under varying imaging protocol, age groups, sex, and tissue type in comparison to other biologically plausible values of d(∥). METHODS: Model residuals were used as the optimality criterion. The model residuals were evaluated in function of d(∥) over the range from 0.5 to 3.0 μm(2)⋅ms(−1). This was done with respect to tissue type (i.e., white matter versus gray matter), sex, age (infancy to late adulthood), and diffusion-weighting protocol (maximum b-value). Variation in the estimated parameters with respect to d(∥) was also explored. RESULTS: Results show d(∥) = 1.7 μm(2)⋅ms(−1) is appropriate for adult brain white matter but it is suboptimal for gray matter with optimal values being significantly lower. d(∥) = 1.7 μm(2)⋅ms(−1) was also suboptimal in the infant brain for both white and gray matter with optimal values being significantly lower. Minor optimum d(∥) differences were observed versus diffusion protocol. No significant sex effects were observed. Additionally, changes in d(∥) resulted in significant changes to the estimated NODDI parameters. CONCLUSION: The default (d(∥)) of 1.7 μm(2)⋅ms(−1) is suboptimal in gray matter and infant brains.
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spelling pubmed-67607762019-10-04 Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation Guerrero, Jose M. Adluru, Nagesh Bendlin, Barbara B. Goldsmith, H. Hill Schaefer, Stacey M. Davidson, Richard J. Kecskemeti, Steven R. Zhang, Hui Alexander, Andrew L. PLoS One Research Article PURPOSE: NODDI is widely used in parameterizing microstructural brain properties. The model includes three signal compartments: intracellular, extracellular, and free water. The neurite compartment intrinsic parallel diffusivity (d(∥)) is set to 1.7 μm(2)⋅ms(−1), though the effects of this assumption have not been extensively explored. This work investigates the optimality of d(∥) = 1.7 μm(2)⋅ms(−1) under varying imaging protocol, age groups, sex, and tissue type in comparison to other biologically plausible values of d(∥). METHODS: Model residuals were used as the optimality criterion. The model residuals were evaluated in function of d(∥) over the range from 0.5 to 3.0 μm(2)⋅ms(−1). This was done with respect to tissue type (i.e., white matter versus gray matter), sex, age (infancy to late adulthood), and diffusion-weighting protocol (maximum b-value). Variation in the estimated parameters with respect to d(∥) was also explored. RESULTS: Results show d(∥) = 1.7 μm(2)⋅ms(−1) is appropriate for adult brain white matter but it is suboptimal for gray matter with optimal values being significantly lower. d(∥) = 1.7 μm(2)⋅ms(−1) was also suboptimal in the infant brain for both white and gray matter with optimal values being significantly lower. Minor optimum d(∥) differences were observed versus diffusion protocol. No significant sex effects were observed. Additionally, changes in d(∥) resulted in significant changes to the estimated NODDI parameters. CONCLUSION: The default (d(∥)) of 1.7 μm(2)⋅ms(−1) is suboptimal in gray matter and infant brains. Public Library of Science 2019-09-25 /pmc/articles/PMC6760776/ /pubmed/31553719 http://dx.doi.org/10.1371/journal.pone.0217118 Text en © 2019 Guerrero et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Guerrero, Jose M.
Adluru, Nagesh
Bendlin, Barbara B.
Goldsmith, H. Hill
Schaefer, Stacey M.
Davidson, Richard J.
Kecskemeti, Steven R.
Zhang, Hui
Alexander, Andrew L.
Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
title Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
title_full Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
title_fullStr Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
title_full_unstemmed Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
title_short Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
title_sort optimizing the intrinsic parallel diffusivity in noddi: an extensive empirical evaluation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760776/
https://www.ncbi.nlm.nih.gov/pubmed/31553719
http://dx.doi.org/10.1371/journal.pone.0217118
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