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Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
PURPOSE: NODDI is widely used in parameterizing microstructural brain properties. The model includes three signal compartments: intracellular, extracellular, and free water. The neurite compartment intrinsic parallel diffusivity (d(∥)) is set to 1.7 μm(2)⋅ms(−1), though the effects of this assumptio...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760776/ https://www.ncbi.nlm.nih.gov/pubmed/31553719 http://dx.doi.org/10.1371/journal.pone.0217118 |
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author | Guerrero, Jose M. Adluru, Nagesh Bendlin, Barbara B. Goldsmith, H. Hill Schaefer, Stacey M. Davidson, Richard J. Kecskemeti, Steven R. Zhang, Hui Alexander, Andrew L. |
author_facet | Guerrero, Jose M. Adluru, Nagesh Bendlin, Barbara B. Goldsmith, H. Hill Schaefer, Stacey M. Davidson, Richard J. Kecskemeti, Steven R. Zhang, Hui Alexander, Andrew L. |
author_sort | Guerrero, Jose M. |
collection | PubMed |
description | PURPOSE: NODDI is widely used in parameterizing microstructural brain properties. The model includes three signal compartments: intracellular, extracellular, and free water. The neurite compartment intrinsic parallel diffusivity (d(∥)) is set to 1.7 μm(2)⋅ms(−1), though the effects of this assumption have not been extensively explored. This work investigates the optimality of d(∥) = 1.7 μm(2)⋅ms(−1) under varying imaging protocol, age groups, sex, and tissue type in comparison to other biologically plausible values of d(∥). METHODS: Model residuals were used as the optimality criterion. The model residuals were evaluated in function of d(∥) over the range from 0.5 to 3.0 μm(2)⋅ms(−1). This was done with respect to tissue type (i.e., white matter versus gray matter), sex, age (infancy to late adulthood), and diffusion-weighting protocol (maximum b-value). Variation in the estimated parameters with respect to d(∥) was also explored. RESULTS: Results show d(∥) = 1.7 μm(2)⋅ms(−1) is appropriate for adult brain white matter but it is suboptimal for gray matter with optimal values being significantly lower. d(∥) = 1.7 μm(2)⋅ms(−1) was also suboptimal in the infant brain for both white and gray matter with optimal values being significantly lower. Minor optimum d(∥) differences were observed versus diffusion protocol. No significant sex effects were observed. Additionally, changes in d(∥) resulted in significant changes to the estimated NODDI parameters. CONCLUSION: The default (d(∥)) of 1.7 μm(2)⋅ms(−1) is suboptimal in gray matter and infant brains. |
format | Online Article Text |
id | pubmed-6760776 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-67607762019-10-04 Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation Guerrero, Jose M. Adluru, Nagesh Bendlin, Barbara B. Goldsmith, H. Hill Schaefer, Stacey M. Davidson, Richard J. Kecskemeti, Steven R. Zhang, Hui Alexander, Andrew L. PLoS One Research Article PURPOSE: NODDI is widely used in parameterizing microstructural brain properties. The model includes three signal compartments: intracellular, extracellular, and free water. The neurite compartment intrinsic parallel diffusivity (d(∥)) is set to 1.7 μm(2)⋅ms(−1), though the effects of this assumption have not been extensively explored. This work investigates the optimality of d(∥) = 1.7 μm(2)⋅ms(−1) under varying imaging protocol, age groups, sex, and tissue type in comparison to other biologically plausible values of d(∥). METHODS: Model residuals were used as the optimality criterion. The model residuals were evaluated in function of d(∥) over the range from 0.5 to 3.0 μm(2)⋅ms(−1). This was done with respect to tissue type (i.e., white matter versus gray matter), sex, age (infancy to late adulthood), and diffusion-weighting protocol (maximum b-value). Variation in the estimated parameters with respect to d(∥) was also explored. RESULTS: Results show d(∥) = 1.7 μm(2)⋅ms(−1) is appropriate for adult brain white matter but it is suboptimal for gray matter with optimal values being significantly lower. d(∥) = 1.7 μm(2)⋅ms(−1) was also suboptimal in the infant brain for both white and gray matter with optimal values being significantly lower. Minor optimum d(∥) differences were observed versus diffusion protocol. No significant sex effects were observed. Additionally, changes in d(∥) resulted in significant changes to the estimated NODDI parameters. CONCLUSION: The default (d(∥)) of 1.7 μm(2)⋅ms(−1) is suboptimal in gray matter and infant brains. Public Library of Science 2019-09-25 /pmc/articles/PMC6760776/ /pubmed/31553719 http://dx.doi.org/10.1371/journal.pone.0217118 Text en © 2019 Guerrero et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Guerrero, Jose M. Adluru, Nagesh Bendlin, Barbara B. Goldsmith, H. Hill Schaefer, Stacey M. Davidson, Richard J. Kecskemeti, Steven R. Zhang, Hui Alexander, Andrew L. Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation |
title | Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation |
title_full | Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation |
title_fullStr | Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation |
title_full_unstemmed | Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation |
title_short | Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation |
title_sort | optimizing the intrinsic parallel diffusivity in noddi: an extensive empirical evaluation |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6760776/ https://www.ncbi.nlm.nih.gov/pubmed/31553719 http://dx.doi.org/10.1371/journal.pone.0217118 |
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