mirtronDB: a mirtron knowledge base

MOTIVATION: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtronDB, the first knowledge database dedicated to mi...

Descripción completa

Detalles Bibliográficos
Autores principales: Da Fonseca, Bruno Henrique Ribeiro, Domingues, Douglas Silva, Paschoal, Alexandre Rossi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761972/
https://www.ncbi.nlm.nih.gov/pubmed/30874795
http://dx.doi.org/10.1093/bioinformatics/btz153
_version_ 1783454132810547200
author Da Fonseca, Bruno Henrique Ribeiro
Domingues, Douglas Silva
Paschoal, Alexandre Rossi
author_facet Da Fonseca, Bruno Henrique Ribeiro
Domingues, Douglas Silva
Paschoal, Alexandre Rossi
author_sort Da Fonseca, Bruno Henrique Ribeiro
collection PubMed
description MOTIVATION: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtronDB, the first knowledge database dedicated to mirtron, and it is available at http://mirtrondb.cp.utfpr.edu.br/. MirtronDB currently contains a total of 1407 mirtron precursors and 2426 mirtron mature sequences in 18 species. RESULTS: Through a user-friendly interface, users can now browse and search mirtrons by organism, organism group, type and name. MirtronDB is a specialized resource that provides free and user-friendly access to knowledge on mirtron data. AVAILABILITY AND IMPLEMENTATION: MirtronDB is available at http://mirtrondb.cp.utfpr.edu.br/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
format Online
Article
Text
id pubmed-6761972
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-67619722019-10-02 mirtronDB: a mirtron knowledge base Da Fonseca, Bruno Henrique Ribeiro Domingues, Douglas Silva Paschoal, Alexandre Rossi Bioinformatics Applications Notes MOTIVATION: Mirtrons arise from short introns with atypical cleavage by using the splicing mechanism. In the current literature, there is no repository centralizing and organizing the data available to the public. To fill this gap, we developed mirtronDB, the first knowledge database dedicated to mirtron, and it is available at http://mirtrondb.cp.utfpr.edu.br/. MirtronDB currently contains a total of 1407 mirtron precursors and 2426 mirtron mature sequences in 18 species. RESULTS: Through a user-friendly interface, users can now browse and search mirtrons by organism, organism group, type and name. MirtronDB is a specialized resource that provides free and user-friendly access to knowledge on mirtron data. AVAILABILITY AND IMPLEMENTATION: MirtronDB is available at http://mirtrondb.cp.utfpr.edu.br/. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2019-10-01 2019-03-15 /pmc/articles/PMC6761972/ /pubmed/30874795 http://dx.doi.org/10.1093/bioinformatics/btz153 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Da Fonseca, Bruno Henrique Ribeiro
Domingues, Douglas Silva
Paschoal, Alexandre Rossi
mirtronDB: a mirtron knowledge base
title mirtronDB: a mirtron knowledge base
title_full mirtronDB: a mirtron knowledge base
title_fullStr mirtronDB: a mirtron knowledge base
title_full_unstemmed mirtronDB: a mirtron knowledge base
title_short mirtronDB: a mirtron knowledge base
title_sort mirtrondb: a mirtron knowledge base
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6761972/
https://www.ncbi.nlm.nih.gov/pubmed/30874795
http://dx.doi.org/10.1093/bioinformatics/btz153
work_keys_str_mv AT dafonsecabrunohenriqueribeiro mirtrondbamirtronknowledgebase
AT dominguesdouglassilva mirtrondbamirtronknowledgebase
AT paschoalalexandrerossi mirtrondbamirtronknowledgebase

Ejemplares similares