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Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil

In this paper, we use multiple scale homogenisation to derive a set of averaged macroscale equations that describe the movement of nutrients in partially saturated soil that contains growing potato tubers. The soil is modelled as a poroelastic material, which is deformed by the growth of the tubers,...

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Autores principales: Duncan, Simon J., Daly, Keith R., McKay Fletcher, Daniel M., Ruiz, Siul, Sweeney, Paul, Roose, Tiina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764939/
https://www.ncbi.nlm.nih.gov/pubmed/31440950
http://dx.doi.org/10.1007/s11538-019-00656-3
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author Duncan, Simon J.
Daly, Keith R.
McKay Fletcher, Daniel M.
Ruiz, Siul
Sweeney, Paul
Roose, Tiina
author_facet Duncan, Simon J.
Daly, Keith R.
McKay Fletcher, Daniel M.
Ruiz, Siul
Sweeney, Paul
Roose, Tiina
author_sort Duncan, Simon J.
collection PubMed
description In this paper, we use multiple scale homogenisation to derive a set of averaged macroscale equations that describe the movement of nutrients in partially saturated soil that contains growing potato tubers. The soil is modelled as a poroelastic material, which is deformed by the growth of the tubers, where the growth of each tuber is dependent on the uptake of nutrients via a sink term within the soil representing root nutrient uptake. Special attention is paid to the reduction in void space, resulting change in local water content and the impact on nutrient diffusion within the soil as the tubers increase in size. To validate the multiple scale homogenisation procedure, we compare the system of homogenised equations to the original set of equations and find that the solutions between the two models differ by [Formula: see text] . However, we find that the computation time between the two sets of equations differs by several orders of magnitude. This is due to the combined effects of the complex three-dimensional geometry and the implementation of a moving boundary condition to capture tuber growth.
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spelling pubmed-67649392019-10-07 Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil Duncan, Simon J. Daly, Keith R. McKay Fletcher, Daniel M. Ruiz, Siul Sweeney, Paul Roose, Tiina Bull Math Biol Original Article In this paper, we use multiple scale homogenisation to derive a set of averaged macroscale equations that describe the movement of nutrients in partially saturated soil that contains growing potato tubers. The soil is modelled as a poroelastic material, which is deformed by the growth of the tubers, where the growth of each tuber is dependent on the uptake of nutrients via a sink term within the soil representing root nutrient uptake. Special attention is paid to the reduction in void space, resulting change in local water content and the impact on nutrient diffusion within the soil as the tubers increase in size. To validate the multiple scale homogenisation procedure, we compare the system of homogenised equations to the original set of equations and find that the solutions between the two models differ by [Formula: see text] . However, we find that the computation time between the two sets of equations differs by several orders of magnitude. This is due to the combined effects of the complex three-dimensional geometry and the implementation of a moving boundary condition to capture tuber growth. Springer US 2019-08-22 2019 /pmc/articles/PMC6764939/ /pubmed/31440950 http://dx.doi.org/10.1007/s11538-019-00656-3 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Duncan, Simon J.
Daly, Keith R.
McKay Fletcher, Daniel M.
Ruiz, Siul
Sweeney, Paul
Roose, Tiina
Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil
title Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil
title_full Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil
title_fullStr Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil
title_full_unstemmed Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil
title_short Multiple Scale Homogenisation of Nutrient Movement and Crop Growth in Partially Saturated Soil
title_sort multiple scale homogenisation of nutrient movement and crop growth in partially saturated soil
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764939/
https://www.ncbi.nlm.nih.gov/pubmed/31440950
http://dx.doi.org/10.1007/s11538-019-00656-3
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