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Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks

Network reconstruction lies at the heart of phylogenetic research. Two well-studied classes of phylogenetic networks include tree-child networks and level-k networks. In a tree-child network, every non-leaf node has a child that is a tree node or a leaf. In a level-k network, the maximum number of r...

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Autores principales: Murakami, Yukihiro, van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764941/
https://www.ncbi.nlm.nih.gov/pubmed/31297691
http://dx.doi.org/10.1007/s11538-019-00641-w
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author Murakami, Yukihiro
van Iersel, Leo
Janssen, Remie
Jones, Mark
Moulton, Vincent
author_facet Murakami, Yukihiro
van Iersel, Leo
Janssen, Remie
Jones, Mark
Moulton, Vincent
author_sort Murakami, Yukihiro
collection PubMed
description Network reconstruction lies at the heart of phylogenetic research. Two well-studied classes of phylogenetic networks include tree-child networks and level-k networks. In a tree-child network, every non-leaf node has a child that is a tree node or a leaf. In a level-k network, the maximum number of reticulations contained in a biconnected component is k. Here, we show that level-k tree-child networks are encoded by their reticulate-edge-deleted subnetworks, which are subnetworks obtained by deleting a single reticulation edge, if [Formula: see text] . Following this, we provide a polynomial-time algorithm for uniquely reconstructing such networks from their reticulate-edge-deleted subnetworks. Moreover, we show that this can even be done when considering subnetworks obtained by deleting one reticulation edge from each biconnected component with k reticulations.
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spelling pubmed-67649412019-10-07 Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks Murakami, Yukihiro van Iersel, Leo Janssen, Remie Jones, Mark Moulton, Vincent Bull Math Biol Original Article Network reconstruction lies at the heart of phylogenetic research. Two well-studied classes of phylogenetic networks include tree-child networks and level-k networks. In a tree-child network, every non-leaf node has a child that is a tree node or a leaf. In a level-k network, the maximum number of reticulations contained in a biconnected component is k. Here, we show that level-k tree-child networks are encoded by their reticulate-edge-deleted subnetworks, which are subnetworks obtained by deleting a single reticulation edge, if [Formula: see text] . Following this, we provide a polynomial-time algorithm for uniquely reconstructing such networks from their reticulate-edge-deleted subnetworks. Moreover, we show that this can even be done when considering subnetworks obtained by deleting one reticulation edge from each biconnected component with k reticulations. Springer US 2019-07-11 2019 /pmc/articles/PMC6764941/ /pubmed/31297691 http://dx.doi.org/10.1007/s11538-019-00641-w Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Murakami, Yukihiro
van Iersel, Leo
Janssen, Remie
Jones, Mark
Moulton, Vincent
Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
title Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
title_full Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
title_fullStr Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
title_full_unstemmed Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
title_short Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
title_sort reconstructing tree-child networks from reticulate-edge-deleted subnetworks
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764941/
https://www.ncbi.nlm.nih.gov/pubmed/31297691
http://dx.doi.org/10.1007/s11538-019-00641-w
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