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Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
Network reconstruction lies at the heart of phylogenetic research. Two well-studied classes of phylogenetic networks include tree-child networks and level-k networks. In a tree-child network, every non-leaf node has a child that is a tree node or a leaf. In a level-k network, the maximum number of r...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764941/ https://www.ncbi.nlm.nih.gov/pubmed/31297691 http://dx.doi.org/10.1007/s11538-019-00641-w |
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author | Murakami, Yukihiro van Iersel, Leo Janssen, Remie Jones, Mark Moulton, Vincent |
author_facet | Murakami, Yukihiro van Iersel, Leo Janssen, Remie Jones, Mark Moulton, Vincent |
author_sort | Murakami, Yukihiro |
collection | PubMed |
description | Network reconstruction lies at the heart of phylogenetic research. Two well-studied classes of phylogenetic networks include tree-child networks and level-k networks. In a tree-child network, every non-leaf node has a child that is a tree node or a leaf. In a level-k network, the maximum number of reticulations contained in a biconnected component is k. Here, we show that level-k tree-child networks are encoded by their reticulate-edge-deleted subnetworks, which are subnetworks obtained by deleting a single reticulation edge, if [Formula: see text] . Following this, we provide a polynomial-time algorithm for uniquely reconstructing such networks from their reticulate-edge-deleted subnetworks. Moreover, we show that this can even be done when considering subnetworks obtained by deleting one reticulation edge from each biconnected component with k reticulations. |
format | Online Article Text |
id | pubmed-6764941 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-67649412019-10-07 Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks Murakami, Yukihiro van Iersel, Leo Janssen, Remie Jones, Mark Moulton, Vincent Bull Math Biol Original Article Network reconstruction lies at the heart of phylogenetic research. Two well-studied classes of phylogenetic networks include tree-child networks and level-k networks. In a tree-child network, every non-leaf node has a child that is a tree node or a leaf. In a level-k network, the maximum number of reticulations contained in a biconnected component is k. Here, we show that level-k tree-child networks are encoded by their reticulate-edge-deleted subnetworks, which are subnetworks obtained by deleting a single reticulation edge, if [Formula: see text] . Following this, we provide a polynomial-time algorithm for uniquely reconstructing such networks from their reticulate-edge-deleted subnetworks. Moreover, we show that this can even be done when considering subnetworks obtained by deleting one reticulation edge from each biconnected component with k reticulations. Springer US 2019-07-11 2019 /pmc/articles/PMC6764941/ /pubmed/31297691 http://dx.doi.org/10.1007/s11538-019-00641-w Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Article Murakami, Yukihiro van Iersel, Leo Janssen, Remie Jones, Mark Moulton, Vincent Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks |
title | Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks |
title_full | Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks |
title_fullStr | Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks |
title_full_unstemmed | Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks |
title_short | Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks |
title_sort | reconstructing tree-child networks from reticulate-edge-deleted subnetworks |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6764941/ https://www.ncbi.nlm.nih.gov/pubmed/31297691 http://dx.doi.org/10.1007/s11538-019-00641-w |
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