Cargando…

Identifying Interaction Clusters for MiRNA and MRNA Pairs in TCGA Network

Existing methods often fail to recognize the conversions for the biological roles of the pairs of genes and microRNAs (miRNAs) between the tumor and normal samples. We have developed a novel cluster scoring method to identify messenger RNA (mRNA) and miRNA interaction pairs and clusters while consid...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dai, Xinqing, Ding, Lizhong, Liu, Hannah, Xu, Zesheng, Jiang, Hui, Handelman, Samuel K, Bai, Yongsheng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2019
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6770970/ https://www.ncbi.nlm.nih.gov/pubmed/31514484 http://dx.doi.org/10.3390/genes10090702

Ejemplares similares

Dissecting the biological relationship between TCGA miRNA and mRNA sequencing data using MMiRNA-Viewer
por: Bai, Yongsheng, et al.
Publicado: (2016)

Identifying miRNA-mRNA Pairs and Novel miRNAs from Hepatocelluar Carcinoma miRNomes and TCGA Database
por: Wu, Ping, et al.
Publicado: (2019)

Clustering analysis of microRNA and mRNA expression data from TCGA using maximum edge-weighted matching algorithms
por: Ding, Lizhong, et al.
Publicado: (2019)

MMiRNA-Viewer(2), a bioinformatics tool for visualizing functional annotation for MiRNA and MRNA pairs in a network
por: Bai, Yongsheng, et al.
Publicado: (2020)

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-mRNA pairs in cisplatin-resistant ovarian cancer
por: Xue, Bai, et al.
Publicado: (2021)

Paired miRNA- and messenger RNA-sequencing identifies novel miRNA-mRNA interactions in multiple myeloma
por: Aass, Kristin Roseth, et al.
Publicado: (2022)

Identifying miRNA/mRNA negative regulation pairs in colorectal cancer
por: Zhou, Xile, et al.
Publicado: (2015)

Integrative analysis of TCGA data identifies miRNAs as drug-specific survival biomarkers
por: Lin, Shuting, et al.
Publicado: (2022)

Bioinformatics analysis of mRNA and miRNA microarray to identify the key miRNA-gene pairs in small-cell lung cancer
por: Mao, Yun, et al.
Publicado: (2019)

Identify miRNA-mRNA regulation pairs to explore potential pathogenesis of lung adenocarcinoma
por: Fan, Xingchen, et al.
Publicado: (2022)

Integrative Analysis of miRNA-mRNA and miRNA-miRNA Interactions
por: Guo, Li, et al.
Publicado: (2014)

Identification of the miRNA-mRNA regulatory network associated with radiosensitivity in esophageal cancer based on integrative analysis of the TCGA and GEO data
por: Chen, Hongmin, et al.
Publicado: (2022)

Identification of miRNA/mRNA-Negative Regulation Pairs in Nasopharyngeal Carcinoma
por: Liu, Minglei, et al.
Publicado: (2016)

Global analysis of miRNA-mRNA regulation pair in bladder cancer
por: Fan, Xingchen, et al.
Publicado: (2022)

Integrated miRNA and mRNA expression profiling to identify mRNA targets of dysregulated miRNAs in pulmonary tuberculosis
por: Zhang, Xing, et al.
Publicado: (2018)

A Systematic Analysis of miRNA-mRNA Paired Variations Reveals Widespread miRNA Misregulation in Breast Cancer
por: Zhong, Lei, et al.
Publicado: (2014)

Identification of key miRNA-mRNA pairs in septic mice by bioinformatics analysis
por: Chen, Jianxin, et al.
Publicado: (2019)

Integrated miRNA and mRNA expression profiling to identify mRNA targets of dysregulated miRNAs in non-obstructive azoospermia
por: Zhuang, Xuan, et al.
Publicado: (2015)

Identification of key miRNA-gene pairs in chronic lymphocytic leukemia through integrated analysis of mRNA and miRNA microarray
por: Li, Jie, et al.
Publicado: (2018)

Quantification of miRNA-mRNA Interactions
por: Muniategui, Ander, et al.
Publicado: (2012)

A radiosensitivity MiRNA signature validated by the TCGA database for head and neck squamous cell carcinomas
por: Liu, Ning, et al.
Publicado: (2015)

A Novel TCGA-Validated, MiRNA-Based Signature for Prediction of Breast Cancer Prognosis and Survival
por: Tian, Baoxing, et al.
Publicado: (2021)

Identifying miRNA-mRNA Networks Associated With COPD Phenotypes
por: Zhuang, Yonghua, et al.
Publicado: (2021)

Comprehensive analysis of the functional microRNA–mRNA regulatory network identifies miRNA signatures associated with glioma malignant progression
por: Li, Yongsheng, et al.
Publicado: (2013)

MMpred: functional miRNA – mRNA interaction analyses by miRNA expression prediction
por: Stempor, Przemyslaw A, et al.
Publicado: (2012)

Identification of Key lncRNA–mRNA Pairs and Functional lncRNAs in Breast Cancer by Integrative Analysis of TCGA Data
por: Li, Zhe, et al.
Publicado: (2021)

Improving miRNA-mRNA interaction predictions
por: Tabas-Madrid, Daniel, et al.
Publicado: (2014)

Integrated analysis of mRNA-seq and miRNA-seq reveals the potential roles of sex-biased miRNA-mRNA pairs in gonad tissue of dark sleeper (Odontobutis potamophila)
por: Zhao, Cheng, et al.
Publicado: (2017)

Novel MicroRNA Candidates and miRNA-mRNA Pairs in Embryonic Stem (ES) Cells
por: Gu, Peili, et al.
Publicado: (2008)

Experimental procedures to identify and validate specific mRNA targets of miRNAs
por: Elton, Terry S., et al.
Publicado: (2015)

Identifying miRNA-mRNA Integration Set Associated With Survival Time
por: Kim, Yongkang, et al.
Publicado: (2021)

Analyzing the miRNA-Gene Networks to Mine the Important miRNAs under Skin of Human and Mouse
por: Wu, Jianghong, et al.
Publicado: (2016)

Characterization of bidirectional gene pairs in The Cancer Genome Atlas (TCGA) dataset
por: Tu, Juchuanli, et al.
Publicado: (2019)

MIMRDA: A Method Incorporating the miRNA and mRNA Expression Profiles for Predicting miRNA-Disease Associations to Identify Key miRNAs (microRNAs)
por: Li, Xianbin, et al.
Publicado: (2022)

High-Throughput miRNA and mRNA Sequencing of Paired Colorectal Normal, Tumor and Metastasis Tissues and Bioinformatic Modeling of miRNA-1 Therapeutic Applications
por: Röhr, Christina, et al.
Publicado: (2013)

Tissue-dependent paired expression of miRNAs
por: Ro, Seungil, et al.
Publicado: (2007)

Dynamic miRNA–mRNA paradigms: New faces of miRNAs
por: Ni, Wen-Juan, et al.
Publicado: (2015)

Bioinformatic Interrogation of 5p-arm and 3p-arm Specific miRNA Expression Using TCGA Datasets
por: Kuo, Wei-Ting, et al.
Publicado: (2015)

Comprehensive analysis of miRNA-mRNA regulatory pairs associated with colorectal cancer and the role in tumor immunity
por: Liu, Cheng, et al.
Publicado: (2023)

Prediction of the mechanism of miRNAs in laryngeal squamous cell carcinoma based on the miRNA-mRNA regulatory network
por: Ma, Jinhua, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_do4g1i0jid7nc5n6qnj3eirtm4