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Aerial-trained deep learning networks for surveying cetaceans from satellite imagery

Most cetacean species are wide-ranging and highly mobile, creating significant challenges for researchers by limiting the scope of data that can be collected and leaving large areas un-surveyed. Aerial surveys have proven an effective way to locate and study cetacean movements but are costly and lim...

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Autores principales: Borowicz, Alex, Le, Hieu, Humphries, Grant, Nehls, Georg, Höschle, Caroline, Kosarev, Vladislav, Lynch, Heather J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6772036/
https://www.ncbi.nlm.nih.gov/pubmed/31574136
http://dx.doi.org/10.1371/journal.pone.0212532
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author Borowicz, Alex
Le, Hieu
Humphries, Grant
Nehls, Georg
Höschle, Caroline
Kosarev, Vladislav
Lynch, Heather J.
author_facet Borowicz, Alex
Le, Hieu
Humphries, Grant
Nehls, Georg
Höschle, Caroline
Kosarev, Vladislav
Lynch, Heather J.
author_sort Borowicz, Alex
collection PubMed
description Most cetacean species are wide-ranging and highly mobile, creating significant challenges for researchers by limiting the scope of data that can be collected and leaving large areas un-surveyed. Aerial surveys have proven an effective way to locate and study cetacean movements but are costly and limited in spatial extent. Here we present a semi-automated pipeline for whale detection from very high-resolution (sub-meter) satellite imagery that makes use of a convolutional neural network (CNN). We trained ResNet, and DenseNet CNNs using down-scaled aerial imagery and tested each model on 31 cm-resolution imagery obtained from the WorldView-3 sensor. Satellite imagery was tiled and the trained algorithms were used to classify whether or not a tile was likely to contain a whale. Our best model correctly classified 100% of tiles with whales, and 94% of tiles containing only water. All model architectures performed well, with learning rate controlling performance more than architecture. While the resolution of commercially-available satellite imagery continues to make whale identification a challenging problem, our approach provides the means to efficiently eliminate areas without whales and, in doing so, greatly accelerates ocean surveys for large cetaceans.
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spelling pubmed-67720362019-10-12 Aerial-trained deep learning networks for surveying cetaceans from satellite imagery Borowicz, Alex Le, Hieu Humphries, Grant Nehls, Georg Höschle, Caroline Kosarev, Vladislav Lynch, Heather J. PLoS One Research Article Most cetacean species are wide-ranging and highly mobile, creating significant challenges for researchers by limiting the scope of data that can be collected and leaving large areas un-surveyed. Aerial surveys have proven an effective way to locate and study cetacean movements but are costly and limited in spatial extent. Here we present a semi-automated pipeline for whale detection from very high-resolution (sub-meter) satellite imagery that makes use of a convolutional neural network (CNN). We trained ResNet, and DenseNet CNNs using down-scaled aerial imagery and tested each model on 31 cm-resolution imagery obtained from the WorldView-3 sensor. Satellite imagery was tiled and the trained algorithms were used to classify whether or not a tile was likely to contain a whale. Our best model correctly classified 100% of tiles with whales, and 94% of tiles containing only water. All model architectures performed well, with learning rate controlling performance more than architecture. While the resolution of commercially-available satellite imagery continues to make whale identification a challenging problem, our approach provides the means to efficiently eliminate areas without whales and, in doing so, greatly accelerates ocean surveys for large cetaceans. Public Library of Science 2019-10-01 /pmc/articles/PMC6772036/ /pubmed/31574136 http://dx.doi.org/10.1371/journal.pone.0212532 Text en © 2019 Borowicz et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Borowicz, Alex
Le, Hieu
Humphries, Grant
Nehls, Georg
Höschle, Caroline
Kosarev, Vladislav
Lynch, Heather J.
Aerial-trained deep learning networks for surveying cetaceans from satellite imagery
title Aerial-trained deep learning networks for surveying cetaceans from satellite imagery
title_full Aerial-trained deep learning networks for surveying cetaceans from satellite imagery
title_fullStr Aerial-trained deep learning networks for surveying cetaceans from satellite imagery
title_full_unstemmed Aerial-trained deep learning networks for surveying cetaceans from satellite imagery
title_short Aerial-trained deep learning networks for surveying cetaceans from satellite imagery
title_sort aerial-trained deep learning networks for surveying cetaceans from satellite imagery
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6772036/
https://www.ncbi.nlm.nih.gov/pubmed/31574136
http://dx.doi.org/10.1371/journal.pone.0212532
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