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Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes
Attention deficit/hyperactivity disorder (ADHD) is a common neurodevelopmental psychiatric disorder. Genome-wide association studies (GWAS) have identified several loci associated with ADHD. However, understanding the biological relevance of these genetic loci has proven to be difficult. Here, we co...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6773763/ https://www.ncbi.nlm.nih.gov/pubmed/31575856 http://dx.doi.org/10.1038/s41467-019-12450-9 |
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author | Liao, Calwing Laporte, Alexandre D. Spiegelman, Dan Akçimen, Fulya Joober, Ridha Dion, Patrick A. Rouleau, Guy A. |
author_facet | Liao, Calwing Laporte, Alexandre D. Spiegelman, Dan Akçimen, Fulya Joober, Ridha Dion, Patrick A. Rouleau, Guy A. |
author_sort | Liao, Calwing |
collection | PubMed |
description | Attention deficit/hyperactivity disorder (ADHD) is a common neurodevelopmental psychiatric disorder. Genome-wide association studies (GWAS) have identified several loci associated with ADHD. However, understanding the biological relevance of these genetic loci has proven to be difficult. Here, we conduct an ADHD transcriptome-wide association study (TWAS) consisting of 19,099 cases and 34,194 controls and identify 9 transcriptome-wide significant hits, of which 6 genes were not implicated in the original GWAS. We demonstrate that two of the previous GWAS hits can be largely explained by expression regulation. Probabilistic causal fine-mapping of TWAS signals prioritizes KAT2B with a posterior probability of 0.467 in the dorsolateral prefrontal cortex and TMEM161B with a posterior probability of 0.838 in the amygdala. Furthermore, pathway enrichment identifies dopaminergic and norepinephrine pathways, which are highly relevant for ADHD. Overall, our findings highlight the power of TWAS to identify and prioritize putatively causal genes. |
format | Online Article Text |
id | pubmed-6773763 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67737632019-10-03 Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes Liao, Calwing Laporte, Alexandre D. Spiegelman, Dan Akçimen, Fulya Joober, Ridha Dion, Patrick A. Rouleau, Guy A. Nat Commun Article Attention deficit/hyperactivity disorder (ADHD) is a common neurodevelopmental psychiatric disorder. Genome-wide association studies (GWAS) have identified several loci associated with ADHD. However, understanding the biological relevance of these genetic loci has proven to be difficult. Here, we conduct an ADHD transcriptome-wide association study (TWAS) consisting of 19,099 cases and 34,194 controls and identify 9 transcriptome-wide significant hits, of which 6 genes were not implicated in the original GWAS. We demonstrate that two of the previous GWAS hits can be largely explained by expression regulation. Probabilistic causal fine-mapping of TWAS signals prioritizes KAT2B with a posterior probability of 0.467 in the dorsolateral prefrontal cortex and TMEM161B with a posterior probability of 0.838 in the amygdala. Furthermore, pathway enrichment identifies dopaminergic and norepinephrine pathways, which are highly relevant for ADHD. Overall, our findings highlight the power of TWAS to identify and prioritize putatively causal genes. Nature Publishing Group UK 2019-10-01 /pmc/articles/PMC6773763/ /pubmed/31575856 http://dx.doi.org/10.1038/s41467-019-12450-9 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Liao, Calwing Laporte, Alexandre D. Spiegelman, Dan Akçimen, Fulya Joober, Ridha Dion, Patrick A. Rouleau, Guy A. Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
title | Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
title_full | Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
title_fullStr | Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
title_full_unstemmed | Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
title_short | Transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
title_sort | transcriptome-wide association study of attention deficit hyperactivity disorder identifies associated genes and phenotypes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6773763/ https://www.ncbi.nlm.nih.gov/pubmed/31575856 http://dx.doi.org/10.1038/s41467-019-12450-9 |
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