Data Integration in Poplar: ‘Omics Layers and Integration Strategies

Populus trichocarpa is an important biofuel feedstock that has been the target of extensive research and is emerging as a model organism for plants, especially woody perennials. This research has generated several large ‘omics datasets. However, only few studies in Populus have attempted to integrat...

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Autores principales: Weighill, Deborah, Tschaplinski, Timothy J., Tuskan, Gerald A., Jacobson, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Genetics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6773870/
https://www.ncbi.nlm.nih.gov/pubmed/31608114
http://dx.doi.org/10.3389/fgene.2019.00874
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author Weighill, Deborah
Tschaplinski, Timothy J.
Tuskan, Gerald A.
Jacobson, Daniel
author_facet Weighill, Deborah
Tschaplinski, Timothy J.
Tuskan, Gerald A.
Jacobson, Daniel
author_sort Weighill, Deborah
collection PubMed
description Populus trichocarpa is an important biofuel feedstock that has been the target of extensive research and is emerging as a model organism for plants, especially woody perennials. This research has generated several large ‘omics datasets. However, only few studies in Populus have attempted to integrate various data types. This review will summarize various ‘omics data layers, focusing on their application in Populus species. Subsequently, network and signal processing techniques for the integration and analysis of these data types will be discussed, with particular reference to examples in Populus.
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spelling pubmed-67738702019-10-13 Data Integration in Poplar: ‘Omics Layers and Integration Strategies Weighill, Deborah Tschaplinski, Timothy J. Tuskan, Gerald A. Jacobson, Daniel Front Genet Genetics Populus trichocarpa is an important biofuel feedstock that has been the target of extensive research and is emerging as a model organism for plants, especially woody perennials. This research has generated several large ‘omics datasets. However, only few studies in Populus have attempted to integrate various data types. This review will summarize various ‘omics data layers, focusing on their application in Populus species. Subsequently, network and signal processing techniques for the integration and analysis of these data types will be discussed, with particular reference to examples in Populus. Frontiers Media S.A. 2019-09-25 /pmc/articles/PMC6773870/ /pubmed/31608114 http://dx.doi.org/10.3389/fgene.2019.00874 Text en Copyright © 2019 Weighill, Tschaplinski, Tuskan and Jacobson http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Weighill, Deborah
Tschaplinski, Timothy J.
Tuskan, Gerald A.
Jacobson, Daniel
Data Integration in Poplar: ‘Omics Layers and Integration Strategies
title Data Integration in Poplar: ‘Omics Layers and Integration Strategies
title_full Data Integration in Poplar: ‘Omics Layers and Integration Strategies
title_fullStr Data Integration in Poplar: ‘Omics Layers and Integration Strategies
title_full_unstemmed Data Integration in Poplar: ‘Omics Layers and Integration Strategies
title_short Data Integration in Poplar: ‘Omics Layers and Integration Strategies
title_sort data integration in poplar: ‘omics layers and integration strategies
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6773870/
https://www.ncbi.nlm.nih.gov/pubmed/31608114
http://dx.doi.org/10.3389/fgene.2019.00874
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