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Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake
Proteins comprise the largest soil N reservoir but cannot be taken up directly by microorganisms and plants due to size constraints and stabilization of proteins in organo-mineral associations. Therefore the cleavage of this high molecular weight organic N to smaller soluble compounds as amino acids...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6774784/ https://www.ncbi.nlm.nih.gov/pubmed/31579309 http://dx.doi.org/10.1016/j.soilbio.2018.12.005 |
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author | Noll, Lisa Zhang, Shasha Wanek, Wolfgang |
author_facet | Noll, Lisa Zhang, Shasha Wanek, Wolfgang |
author_sort | Noll, Lisa |
collection | PubMed |
description | Proteins comprise the largest soil N reservoir but cannot be taken up directly by microorganisms and plants due to size constraints and stabilization of proteins in organo-mineral associations. Therefore the cleavage of this high molecular weight organic N to smaller soluble compounds as amino acids is a key step in the terrestrial N cycle. In the last years two isotope pool dilution approaches have been successfully established to measure gross rates of protein depolymerization and microbial amino acid uptake in soils. However, both require laborious sample preparation and analyses, which limits sample throughput. Therefore, we here present a novel isotope pool dilution approach based on the addition of (15)N-labeled amino acids to soils and subsequent concentration and (15)N analysis by the oxidation of α-amino groups to NO(2)(−) and further reduction to N(2)O, followed by purge-and-trap isotope ratio mass spectrometry (PT-IRMS). We applied this method in mesocosm experiments with forest and meadow soils as well as with a cropland soil amended with either organic C (cellulose) or organic N (bovine serum albumin). To measure direct organic N mineralization to NH(4)(+), the latter was captured in acid traps and analyzed by an elemental analyzer coupled to an isotope ratio mass spectrometer (EA-IRMS). Our results demonstrate that the proposed method provides fast and precise measurements of at%(15)N even at low amino acid concentrations, allows high sample throughput and enables parallel estimations of instantaneous organic N mineralization rates. |
format | Online Article Text |
id | pubmed-6774784 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
record_format | MEDLINE/PubMed |
spelling | pubmed-67747842019-10-02 Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake Noll, Lisa Zhang, Shasha Wanek, Wolfgang Soil Biol Biochem Article Proteins comprise the largest soil N reservoir but cannot be taken up directly by microorganisms and plants due to size constraints and stabilization of proteins in organo-mineral associations. Therefore the cleavage of this high molecular weight organic N to smaller soluble compounds as amino acids is a key step in the terrestrial N cycle. In the last years two isotope pool dilution approaches have been successfully established to measure gross rates of protein depolymerization and microbial amino acid uptake in soils. However, both require laborious sample preparation and analyses, which limits sample throughput. Therefore, we here present a novel isotope pool dilution approach based on the addition of (15)N-labeled amino acids to soils and subsequent concentration and (15)N analysis by the oxidation of α-amino groups to NO(2)(−) and further reduction to N(2)O, followed by purge-and-trap isotope ratio mass spectrometry (PT-IRMS). We applied this method in mesocosm experiments with forest and meadow soils as well as with a cropland soil amended with either organic C (cellulose) or organic N (bovine serum albumin). To measure direct organic N mineralization to NH(4)(+), the latter was captured in acid traps and analyzed by an elemental analyzer coupled to an isotope ratio mass spectrometer (EA-IRMS). Our results demonstrate that the proposed method provides fast and precise measurements of at%(15)N even at low amino acid concentrations, allows high sample throughput and enables parallel estimations of instantaneous organic N mineralization rates. 2018-12-07 2019-03 /pmc/articles/PMC6774784/ /pubmed/31579309 http://dx.doi.org/10.1016/j.soilbio.2018.12.005 Text en https://creativecommons.org/licenses/BY-NC-ND/4.0/ This is an open access article under the CC BY-NC-ND license (https://creativecommons.org/licenses/BY-NC-ND/4.0/). |
spellingShingle | Article Noll, Lisa Zhang, Shasha Wanek, Wolfgang Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake |
title | Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake |
title_full | Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake |
title_fullStr | Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake |
title_full_unstemmed | Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake |
title_short | Novel high-throughput approach to determine key processes of soil organic nitrogen cycling: Gross protein depolymerization and microbial amino acid uptake |
title_sort | novel high-throughput approach to determine key processes of soil organic nitrogen cycling: gross protein depolymerization and microbial amino acid uptake |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6774784/ https://www.ncbi.nlm.nih.gov/pubmed/31579309 http://dx.doi.org/10.1016/j.soilbio.2018.12.005 |
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