Cargando…
Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder
Obsessive and Compulsive Symptoms (OCS) or Obsessive Compulsive Disorder (OCD) in the context of schizophrenia or related disorders are of clinical importance as these are associated with a range of adverse outcomes. Natural Language Processing (NLP) applied to Electronic Health Records (EHRs) prese...
Autores principales: | , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775052/ https://www.ncbi.nlm.nih.gov/pubmed/31578348 http://dx.doi.org/10.1038/s41598-019-49165-2 |
_version_ | 1783456152626921472 |
---|---|
author | Chandran, David Robbins, Deborah Ahn Chang, Chin-Kuo Shetty, Hitesh Sanyal, Jyoti Downs, Johnny Fok, Marcella Ball, Michael Jackson, Richard Stewart, Robert Cohen, Hannah Vermeulen, Jentien M. Schirmbeck, Frederike de Haan, Lieuwe Hayes, Richard |
author_facet | Chandran, David Robbins, Deborah Ahn Chang, Chin-Kuo Shetty, Hitesh Sanyal, Jyoti Downs, Johnny Fok, Marcella Ball, Michael Jackson, Richard Stewart, Robert Cohen, Hannah Vermeulen, Jentien M. Schirmbeck, Frederike de Haan, Lieuwe Hayes, Richard |
author_sort | Chandran, David |
collection | PubMed |
description | Obsessive and Compulsive Symptoms (OCS) or Obsessive Compulsive Disorder (OCD) in the context of schizophrenia or related disorders are of clinical importance as these are associated with a range of adverse outcomes. Natural Language Processing (NLP) applied to Electronic Health Records (EHRs) presents an opportunity to create large datasets to facilitate research in this area. This is a challenging endeavour however, because of the wide range of ways in which these symptoms are recorded, and the overlap of terms used to describe OCS with those used to describe other conditions. We developed an NLP algorithm to extract OCS information from a large mental healthcare EHR data resource at the South London and Maudsley NHS Foundation Trust using its Clinical Record Interactive Search (CRIS) facility. We extracted documents from individuals who had received a diagnosis of schizophrenia, schizoaffective disorder, or bipolar disorder. These text documents, annotated by human coders, were used for developing and refining the NLP algorithm (600 documents) with an additional set reserved for final validation (300 documents). The developed NLP algorithm utilized a rules-based approach to identify each of symptoms associated with OCS, and then combined them to determine the overall number of instances of OCS. After its implementation, the algorithm was shown to identify OCS with a precision and recall (with 95% confidence intervals) of 0.77 (0.65–0.86) and 0.67 (0.55–0.77) respectively. The development of this application demonstrated the potential to extract complex symptomatic data from mental healthcare EHRs using NLP to facilitate further analyses of these clinical symptoms and their relevance for prognosis and intervention response. |
format | Online Article Text |
id | pubmed-6775052 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67750522019-10-09 Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder Chandran, David Robbins, Deborah Ahn Chang, Chin-Kuo Shetty, Hitesh Sanyal, Jyoti Downs, Johnny Fok, Marcella Ball, Michael Jackson, Richard Stewart, Robert Cohen, Hannah Vermeulen, Jentien M. Schirmbeck, Frederike de Haan, Lieuwe Hayes, Richard Sci Rep Article Obsessive and Compulsive Symptoms (OCS) or Obsessive Compulsive Disorder (OCD) in the context of schizophrenia or related disorders are of clinical importance as these are associated with a range of adverse outcomes. Natural Language Processing (NLP) applied to Electronic Health Records (EHRs) presents an opportunity to create large datasets to facilitate research in this area. This is a challenging endeavour however, because of the wide range of ways in which these symptoms are recorded, and the overlap of terms used to describe OCS with those used to describe other conditions. We developed an NLP algorithm to extract OCS information from a large mental healthcare EHR data resource at the South London and Maudsley NHS Foundation Trust using its Clinical Record Interactive Search (CRIS) facility. We extracted documents from individuals who had received a diagnosis of schizophrenia, schizoaffective disorder, or bipolar disorder. These text documents, annotated by human coders, were used for developing and refining the NLP algorithm (600 documents) with an additional set reserved for final validation (300 documents). The developed NLP algorithm utilized a rules-based approach to identify each of symptoms associated with OCS, and then combined them to determine the overall number of instances of OCS. After its implementation, the algorithm was shown to identify OCS with a precision and recall (with 95% confidence intervals) of 0.77 (0.65–0.86) and 0.67 (0.55–0.77) respectively. The development of this application demonstrated the potential to extract complex symptomatic data from mental healthcare EHRs using NLP to facilitate further analyses of these clinical symptoms and their relevance for prognosis and intervention response. Nature Publishing Group UK 2019-10-02 /pmc/articles/PMC6775052/ /pubmed/31578348 http://dx.doi.org/10.1038/s41598-019-49165-2 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Chandran, David Robbins, Deborah Ahn Chang, Chin-Kuo Shetty, Hitesh Sanyal, Jyoti Downs, Johnny Fok, Marcella Ball, Michael Jackson, Richard Stewart, Robert Cohen, Hannah Vermeulen, Jentien M. Schirmbeck, Frederike de Haan, Lieuwe Hayes, Richard Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
title | Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
title_full | Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
title_fullStr | Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
title_full_unstemmed | Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
title_short | Use of Natural Language Processing to identify Obsessive Compulsive Symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
title_sort | use of natural language processing to identify obsessive compulsive symptoms in patients with schizophrenia, schizoaffective disorder or bipolar disorder |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775052/ https://www.ncbi.nlm.nih.gov/pubmed/31578348 http://dx.doi.org/10.1038/s41598-019-49165-2 |
work_keys_str_mv | AT chandrandavid useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT robbinsdeborahahn useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT changchinkuo useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT shettyhitesh useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT sanyaljyoti useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT downsjohnny useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT fokmarcella useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT ballmichael useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT jacksonrichard useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT stewartrobert useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT cohenhannah useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT vermeulenjentienm useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT schirmbeckfrederike useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT dehaanlieuwe useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder AT hayesrichard useofnaturallanguageprocessingtoidentifyobsessivecompulsivesymptomsinpatientswithschizophreniaschizoaffectivedisorderorbipolardisorder |