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CNN-based diagnosis models for canine ulcerative keratitis

The purpose of this methodological study was to develop a convolutional neural network (CNN), which is a recently developed deep-learning-based image recognition method, to determine corneal ulcer severity in dogs. The CNN model was trained with images for which corneal ulcer severity (normal, super...

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Autores principales: Kim, Joon Young, Lee, Ha Eun, Choi, Yeon Hyung, Lee, Suk Jun, Jeon, Jong Soo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775068/
https://www.ncbi.nlm.nih.gov/pubmed/31578338
http://dx.doi.org/10.1038/s41598-019-50437-0
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author Kim, Joon Young
Lee, Ha Eun
Choi, Yeon Hyung
Lee, Suk Jun
Jeon, Jong Soo
author_facet Kim, Joon Young
Lee, Ha Eun
Choi, Yeon Hyung
Lee, Suk Jun
Jeon, Jong Soo
author_sort Kim, Joon Young
collection PubMed
description The purpose of this methodological study was to develop a convolutional neural network (CNN), which is a recently developed deep-learning-based image recognition method, to determine corneal ulcer severity in dogs. The CNN model was trained with images for which corneal ulcer severity (normal, superficial, and deep) were previously classified by veterinary ophthalmologists’ diagnostic evaluations of corneal photographs from patients who visited the Veterinary Medical Teaching Hospital (VMTH) at Konkuk University and 3 different veterinary ophthalmology specialty hospitals in Korea. The original images (depicting normal corneas (36) and corneas with superficial (47) ulcers, deep (47) ulcers), flipped images (total 520), rotated images (total 520), and both flipped and rotated images (total 1,040) were labeled, learned and evaluated with GoogLeNet, ResNet, and VGGNet models, and the severity of each corneal ulcer image was determined. To accomplish this task, models based on TensorFlow, an open-source software library developed by Google, were used, and the labeled images were converted into TensorFlow record (TFRecord) format. The models were fine-tuned using a CNN model trained on the ImageNet dataset and then used to predict severity. Most of the models achieved accuracies of over 90% when classifying superficial and deep corneal ulcers, and ResNet and VGGNet achieved accuracies over 90% for classifying normal corneas, corneas with superficial ulcers, and corneas with deep ulcers. This study proposes a method to effectively determine corneal ulcer severity in dogs by using a CNN and concludes that multiple image classification models can be used in the veterinary field.
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spelling pubmed-67750682019-10-09 CNN-based diagnosis models for canine ulcerative keratitis Kim, Joon Young Lee, Ha Eun Choi, Yeon Hyung Lee, Suk Jun Jeon, Jong Soo Sci Rep Article The purpose of this methodological study was to develop a convolutional neural network (CNN), which is a recently developed deep-learning-based image recognition method, to determine corneal ulcer severity in dogs. The CNN model was trained with images for which corneal ulcer severity (normal, superficial, and deep) were previously classified by veterinary ophthalmologists’ diagnostic evaluations of corneal photographs from patients who visited the Veterinary Medical Teaching Hospital (VMTH) at Konkuk University and 3 different veterinary ophthalmology specialty hospitals in Korea. The original images (depicting normal corneas (36) and corneas with superficial (47) ulcers, deep (47) ulcers), flipped images (total 520), rotated images (total 520), and both flipped and rotated images (total 1,040) were labeled, learned and evaluated with GoogLeNet, ResNet, and VGGNet models, and the severity of each corneal ulcer image was determined. To accomplish this task, models based on TensorFlow, an open-source software library developed by Google, were used, and the labeled images were converted into TensorFlow record (TFRecord) format. The models were fine-tuned using a CNN model trained on the ImageNet dataset and then used to predict severity. Most of the models achieved accuracies of over 90% when classifying superficial and deep corneal ulcers, and ResNet and VGGNet achieved accuracies over 90% for classifying normal corneas, corneas with superficial ulcers, and corneas with deep ulcers. This study proposes a method to effectively determine corneal ulcer severity in dogs by using a CNN and concludes that multiple image classification models can be used in the veterinary field. Nature Publishing Group UK 2019-10-02 /pmc/articles/PMC6775068/ /pubmed/31578338 http://dx.doi.org/10.1038/s41598-019-50437-0 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kim, Joon Young
Lee, Ha Eun
Choi, Yeon Hyung
Lee, Suk Jun
Jeon, Jong Soo
CNN-based diagnosis models for canine ulcerative keratitis
title CNN-based diagnosis models for canine ulcerative keratitis
title_full CNN-based diagnosis models for canine ulcerative keratitis
title_fullStr CNN-based diagnosis models for canine ulcerative keratitis
title_full_unstemmed CNN-based diagnosis models for canine ulcerative keratitis
title_short CNN-based diagnosis models for canine ulcerative keratitis
title_sort cnn-based diagnosis models for canine ulcerative keratitis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775068/
https://www.ncbi.nlm.nih.gov/pubmed/31578338
http://dx.doi.org/10.1038/s41598-019-50437-0
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