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A Fast Parameter Identification Framework for Personalized Pharmacokinetics
This paper introduces a novel framework for fast parameter identification of personalized pharmacokinetic problems. Given one sample observation of a new subject, the framework predicts the parameters of the subject based on prior knowledge from a pharmacokinetic database. The feasibility of this fr...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775128/ https://www.ncbi.nlm.nih.gov/pubmed/31578414 http://dx.doi.org/10.1038/s41598-019-50810-z |
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author | Yang, Chenxi Tavassolian, Negar Haddad, Wassim M. Bailey, James M. Gholami, Behnood |
author_facet | Yang, Chenxi Tavassolian, Negar Haddad, Wassim M. Bailey, James M. Gholami, Behnood |
author_sort | Yang, Chenxi |
collection | PubMed |
description | This paper introduces a novel framework for fast parameter identification of personalized pharmacokinetic problems. Given one sample observation of a new subject, the framework predicts the parameters of the subject based on prior knowledge from a pharmacokinetic database. The feasibility of this framework was demonstrated by developing a new algorithm based on the Cluster Newton method, namely the constrained Cluster Newton method, where the initial points of the parameters are constrained by the database. The algorithm was tested with the compartmental model of propofol on a database of 59 subjects. The average overall absolute percentage error based on constrained Cluster Newton method is 12.10% with the threshold approach, and 13.42% with the nearest-neighbor approach. The average computation time of one estimation is 13.10 seconds. Using parallel computing, the average computation time is reduced to 1.54 seconds, achieved with 12 parallel workers. The results suggest that the proposed framework can effectively improve the prediction accuracy of the pharmacokinetic parameters with limited observations in comparison to the conventional methods. Computation cost analyses indicate that the proposed framework can take advantage of parallel computing and provide solutions within practical response times, leading to fast and accurate parameter identification of pharmacokinetic problems. |
format | Online Article Text |
id | pubmed-6775128 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67751282019-10-09 A Fast Parameter Identification Framework for Personalized Pharmacokinetics Yang, Chenxi Tavassolian, Negar Haddad, Wassim M. Bailey, James M. Gholami, Behnood Sci Rep Article This paper introduces a novel framework for fast parameter identification of personalized pharmacokinetic problems. Given one sample observation of a new subject, the framework predicts the parameters of the subject based on prior knowledge from a pharmacokinetic database. The feasibility of this framework was demonstrated by developing a new algorithm based on the Cluster Newton method, namely the constrained Cluster Newton method, where the initial points of the parameters are constrained by the database. The algorithm was tested with the compartmental model of propofol on a database of 59 subjects. The average overall absolute percentage error based on constrained Cluster Newton method is 12.10% with the threshold approach, and 13.42% with the nearest-neighbor approach. The average computation time of one estimation is 13.10 seconds. Using parallel computing, the average computation time is reduced to 1.54 seconds, achieved with 12 parallel workers. The results suggest that the proposed framework can effectively improve the prediction accuracy of the pharmacokinetic parameters with limited observations in comparison to the conventional methods. Computation cost analyses indicate that the proposed framework can take advantage of parallel computing and provide solutions within practical response times, leading to fast and accurate parameter identification of pharmacokinetic problems. Nature Publishing Group UK 2019-10-02 /pmc/articles/PMC6775128/ /pubmed/31578414 http://dx.doi.org/10.1038/s41598-019-50810-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yang, Chenxi Tavassolian, Negar Haddad, Wassim M. Bailey, James M. Gholami, Behnood A Fast Parameter Identification Framework for Personalized Pharmacokinetics |
title | A Fast Parameter Identification Framework for Personalized Pharmacokinetics |
title_full | A Fast Parameter Identification Framework for Personalized Pharmacokinetics |
title_fullStr | A Fast Parameter Identification Framework for Personalized Pharmacokinetics |
title_full_unstemmed | A Fast Parameter Identification Framework for Personalized Pharmacokinetics |
title_short | A Fast Parameter Identification Framework for Personalized Pharmacokinetics |
title_sort | fast parameter identification framework for personalized pharmacokinetics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775128/ https://www.ncbi.nlm.nih.gov/pubmed/31578414 http://dx.doi.org/10.1038/s41598-019-50810-z |
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