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The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Ivyspring International Publisher
2019
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775862/ https://www.ncbi.nlm.nih.gov/pubmed/31588248 http://dx.doi.org/10.7150/jgen.38149 |
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author | Suzuki, Shigekatsu Yamaguchi, Haruyo Kawachi, Masanobu |
author_facet | Suzuki, Shigekatsu Yamaguchi, Haruyo Kawachi, Masanobu |
author_sort | Suzuki, Shigekatsu |
collection | PubMed |
description | Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES-46 draft genome and performed comparative analyses among Arthrospira species to elucidate the genomic background of this strain. The genome consists of 5.7 Mbp with a GC% of 44.5% and encodes 5,008 proteins. Our phylogenetic analysis using multiple orthologous proteins shows that Arthrospira is divided into two clades and that NIES-46 is closely related to A. platensis NIES-39. The genome structure and protein functions are highly conserved between A. platensis NIES-39 and NIES-46, suggesting that these two strains have recently diverged. Genes involved in hydrogen production are well-conserved among Arthrospira species, indicating conserved abilities to produce hydrogen. |
format | Online Article Text |
id | pubmed-6775862 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-67758622019-10-06 The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 Suzuki, Shigekatsu Yamaguchi, Haruyo Kawachi, Masanobu J Genomics Research Paper Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES-46 draft genome and performed comparative analyses among Arthrospira species to elucidate the genomic background of this strain. The genome consists of 5.7 Mbp with a GC% of 44.5% and encodes 5,008 proteins. Our phylogenetic analysis using multiple orthologous proteins shows that Arthrospira is divided into two clades and that NIES-46 is closely related to A. platensis NIES-39. The genome structure and protein functions are highly conserved between A. platensis NIES-39 and NIES-46, suggesting that these two strains have recently diverged. Genes involved in hydrogen production are well-conserved among Arthrospira species, indicating conserved abilities to produce hydrogen. Ivyspring International Publisher 2019-09-18 /pmc/articles/PMC6775862/ /pubmed/31588248 http://dx.doi.org/10.7150/jgen.38149 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Suzuki, Shigekatsu Yamaguchi, Haruyo Kawachi, Masanobu The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 |
title | The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 |
title_full | The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 |
title_fullStr | The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 |
title_full_unstemmed | The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 |
title_short | The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 |
title_sort | draft genome of a hydrogen-producing cyanobacterium, arthrospira platensis nies-46 |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775862/ https://www.ncbi.nlm.nih.gov/pubmed/31588248 http://dx.doi.org/10.7150/jgen.38149 |
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