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The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46

Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES...

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Autores principales: Suzuki, Shigekatsu, Yamaguchi, Haruyo, Kawachi, Masanobu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775862/
https://www.ncbi.nlm.nih.gov/pubmed/31588248
http://dx.doi.org/10.7150/jgen.38149
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author Suzuki, Shigekatsu
Yamaguchi, Haruyo
Kawachi, Masanobu
author_facet Suzuki, Shigekatsu
Yamaguchi, Haruyo
Kawachi, Masanobu
author_sort Suzuki, Shigekatsu
collection PubMed
description Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES-46 draft genome and performed comparative analyses among Arthrospira species to elucidate the genomic background of this strain. The genome consists of 5.7 Mbp with a GC% of 44.5% and encodes 5,008 proteins. Our phylogenetic analysis using multiple orthologous proteins shows that Arthrospira is divided into two clades and that NIES-46 is closely related to A. platensis NIES-39. The genome structure and protein functions are highly conserved between A. platensis NIES-39 and NIES-46, suggesting that these two strains have recently diverged. Genes involved in hydrogen production are well-conserved among Arthrospira species, indicating conserved abilities to produce hydrogen.
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spelling pubmed-67758622019-10-06 The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46 Suzuki, Shigekatsu Yamaguchi, Haruyo Kawachi, Masanobu J Genomics Research Paper Arthrospira is an economically important cyanobacterium that contains many useful products, including proteins, vitamins, lipids, and pigments, and it is distributed in several alkaline soda lakes. Arthrospira platensis NIES-46 produces large amounts of hydrogen. In this study, we sequenced the NIES-46 draft genome and performed comparative analyses among Arthrospira species to elucidate the genomic background of this strain. The genome consists of 5.7 Mbp with a GC% of 44.5% and encodes 5,008 proteins. Our phylogenetic analysis using multiple orthologous proteins shows that Arthrospira is divided into two clades and that NIES-46 is closely related to A. platensis NIES-39. The genome structure and protein functions are highly conserved between A. platensis NIES-39 and NIES-46, suggesting that these two strains have recently diverged. Genes involved in hydrogen production are well-conserved among Arthrospira species, indicating conserved abilities to produce hydrogen. Ivyspring International Publisher 2019-09-18 /pmc/articles/PMC6775862/ /pubmed/31588248 http://dx.doi.org/10.7150/jgen.38149 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Suzuki, Shigekatsu
Yamaguchi, Haruyo
Kawachi, Masanobu
The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
title The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
title_full The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
title_fullStr The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
title_full_unstemmed The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
title_short The Draft Genome of a Hydrogen-producing Cyanobacterium, Arthrospira platensis NIES-46
title_sort draft genome of a hydrogen-producing cyanobacterium, arthrospira platensis nies-46
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775862/
https://www.ncbi.nlm.nih.gov/pubmed/31588248
http://dx.doi.org/10.7150/jgen.38149
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