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Interactions in self-assembled microbial communities saturate with diversity

How the diversity of organisms competing for or sharing resources influences community function is an important question in ecology but has rarely been explored in natural microbial communities. These generally contain large numbers of species making it difficult to disentangle how the effects of di...

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Autores principales: Yu, Xiaoqian, Polz, Martin F., Alm, Eric J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775987/
https://www.ncbi.nlm.nih.gov/pubmed/30809013
http://dx.doi.org/10.1038/s41396-019-0356-5
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author Yu, Xiaoqian
Polz, Martin F.
Alm, Eric J.
author_facet Yu, Xiaoqian
Polz, Martin F.
Alm, Eric J.
author_sort Yu, Xiaoqian
collection PubMed
description How the diversity of organisms competing for or sharing resources influences community function is an important question in ecology but has rarely been explored in natural microbial communities. These generally contain large numbers of species making it difficult to disentangle how the effects of different interactions scale with diversity. Here, we show that changing diversity affects measures of community function in relatively simple communities but that increasing richness beyond a threshold has little detectable effect. We generated self-assembled communities with a wide range of diversity by growth of cells from serially diluted seawater on brown algal leachate. We subsequently isolated the most abundant taxa from these communities via dilution-to-extinction in order to compare productivity functions of the entire community to those of individual taxa. To parse the effect of different types of organismal interactions, we defined relative total function (RTF) as an index for positive or negative effects of diversity on community function. Our analysis identified three overall regimes with increasing diversity. At low richness (<12 taxa), positive and negative effects of interactions were both weak, while at moderate richness (12–26 taxa), community resource uptake increased but the carbon use efficiency decreased. Finally, beyond 26 taxa, the effect of interactions on community function saturated and further diversity increases did not affect community function. Although more diverse communities had overall greater access to resources, on average individual taxa within these communities had lower resource availability and reduced carbon use efficiency. Our results thus suggest competition and complementation simultaneously increase with diversity but both saturate at a threshold.
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spelling pubmed-67759872019-10-04 Interactions in self-assembled microbial communities saturate with diversity Yu, Xiaoqian Polz, Martin F. Alm, Eric J. ISME J Article How the diversity of organisms competing for or sharing resources influences community function is an important question in ecology but has rarely been explored in natural microbial communities. These generally contain large numbers of species making it difficult to disentangle how the effects of different interactions scale with diversity. Here, we show that changing diversity affects measures of community function in relatively simple communities but that increasing richness beyond a threshold has little detectable effect. We generated self-assembled communities with a wide range of diversity by growth of cells from serially diluted seawater on brown algal leachate. We subsequently isolated the most abundant taxa from these communities via dilution-to-extinction in order to compare productivity functions of the entire community to those of individual taxa. To parse the effect of different types of organismal interactions, we defined relative total function (RTF) as an index for positive or negative effects of diversity on community function. Our analysis identified three overall regimes with increasing diversity. At low richness (<12 taxa), positive and negative effects of interactions were both weak, while at moderate richness (12–26 taxa), community resource uptake increased but the carbon use efficiency decreased. Finally, beyond 26 taxa, the effect of interactions on community function saturated and further diversity increases did not affect community function. Although more diverse communities had overall greater access to resources, on average individual taxa within these communities had lower resource availability and reduced carbon use efficiency. Our results thus suggest competition and complementation simultaneously increase with diversity but both saturate at a threshold. Nature Publishing Group UK 2019-02-26 2019-06 /pmc/articles/PMC6775987/ /pubmed/30809013 http://dx.doi.org/10.1038/s41396-019-0356-5 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yu, Xiaoqian
Polz, Martin F.
Alm, Eric J.
Interactions in self-assembled microbial communities saturate with diversity
title Interactions in self-assembled microbial communities saturate with diversity
title_full Interactions in self-assembled microbial communities saturate with diversity
title_fullStr Interactions in self-assembled microbial communities saturate with diversity
title_full_unstemmed Interactions in self-assembled microbial communities saturate with diversity
title_short Interactions in self-assembled microbial communities saturate with diversity
title_sort interactions in self-assembled microbial communities saturate with diversity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6775987/
https://www.ncbi.nlm.nih.gov/pubmed/30809013
http://dx.doi.org/10.1038/s41396-019-0356-5
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