Cargando…

Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health

Dogs are the most phenotypically diverse mammalian species, and they possess more known heritable disorders than any other non-human mammal. Efforts to catalog and characterize genetic variation across well-chosen populations of canines are necessary to advance our understanding of their evolutionar...

Descripción completa

Detalles Bibliográficos
Autores principales: Ostrander, Elaine A, Wang, Guo-Dong, Larson, Greger, vonHoldt, Bridgett M, Davis, Brian W, Jagannathan, Vidhya, Hitte, Christophe, Wayne, Robert K, Zhang, Ya-Ping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776107/
https://www.ncbi.nlm.nih.gov/pubmed/31598383
http://dx.doi.org/10.1093/nsr/nwz049
_version_ 1783456363679055872
author Ostrander, Elaine A
Wang, Guo-Dong
Larson, Greger
vonHoldt, Bridgett M
Davis, Brian W
Jagannathan, Vidhya
Hitte, Christophe
Wayne, Robert K
Zhang, Ya-Ping
author_facet Ostrander, Elaine A
Wang, Guo-Dong
Larson, Greger
vonHoldt, Bridgett M
Davis, Brian W
Jagannathan, Vidhya
Hitte, Christophe
Wayne, Robert K
Zhang, Ya-Ping
author_sort Ostrander, Elaine A
collection PubMed
description Dogs are the most phenotypically diverse mammalian species, and they possess more known heritable disorders than any other non-human mammal. Efforts to catalog and characterize genetic variation across well-chosen populations of canines are necessary to advance our understanding of their evolutionary history and genetic architecture. To date, no organized effort has been undertaken to sequence the world's canid populations. The Dog10K Consortium (http://www.dog10kgenomes.org) is an international collaboration of researchers from across the globe who will generate 20× whole genomes from 10 000 canids in 5 years. This effort will capture the genetic diversity that underlies the phenotypic and geographical variability of modern canids worldwide. Breeds, village dogs, niche populations and extended pedigrees are currently being sequenced, and de novo assemblies of multiple canids are being constructed. This unprecedented dataset will address the genetic underpinnings of domestication, breed formation, aging, behavior and morphological variation. More generally, this effort will advance our understanding of human and canine health.
format Online
Article
Text
id pubmed-6776107
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-67761072019-10-07 Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health Ostrander, Elaine A Wang, Guo-Dong Larson, Greger vonHoldt, Bridgett M Davis, Brian W Jagannathan, Vidhya Hitte, Christophe Wayne, Robert K Zhang, Ya-Ping Natl Sci Rev Review Dogs are the most phenotypically diverse mammalian species, and they possess more known heritable disorders than any other non-human mammal. Efforts to catalog and characterize genetic variation across well-chosen populations of canines are necessary to advance our understanding of their evolutionary history and genetic architecture. To date, no organized effort has been undertaken to sequence the world's canid populations. The Dog10K Consortium (http://www.dog10kgenomes.org) is an international collaboration of researchers from across the globe who will generate 20× whole genomes from 10 000 canids in 5 years. This effort will capture the genetic diversity that underlies the phenotypic and geographical variability of modern canids worldwide. Breeds, village dogs, niche populations and extended pedigrees are currently being sequenced, and de novo assemblies of multiple canids are being constructed. This unprecedented dataset will address the genetic underpinnings of domestication, breed formation, aging, behavior and morphological variation. More generally, this effort will advance our understanding of human and canine health. Oxford University Press 2019-07 2019-04-10 /pmc/articles/PMC6776107/ /pubmed/31598383 http://dx.doi.org/10.1093/nsr/nwz049 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of China Science Publishing & Media Ltd. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review
Ostrander, Elaine A
Wang, Guo-Dong
Larson, Greger
vonHoldt, Bridgett M
Davis, Brian W
Jagannathan, Vidhya
Hitte, Christophe
Wayne, Robert K
Zhang, Ya-Ping
Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
title Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
title_full Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
title_fullStr Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
title_full_unstemmed Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
title_short Dog10K: an international sequencing effort to advance studies of canine domestication, phenotypes and health
title_sort dog10k: an international sequencing effort to advance studies of canine domestication, phenotypes and health
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776107/
https://www.ncbi.nlm.nih.gov/pubmed/31598383
http://dx.doi.org/10.1093/nsr/nwz049
work_keys_str_mv AT ostranderelainea dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT wangguodong dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT larsongreger dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT vonholdtbridgettm dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT davisbrianw dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT jagannathanvidhya dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT hittechristophe dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT waynerobertk dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT zhangyaping dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth
AT dog10kaninternationalsequencingefforttoadvancestudiesofcaninedomesticationphenotypesandhealth