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Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand

Cholangiocarcinoma (CCA) is a malignant neoplasm of the biliary tract. Thailand reports the highest incidence of CCA in the world. The aim of this study was to map the distribution of CCA and identify spatial disease clusters in Northeast Thailand. Individual-level data of patients with histopatholo...

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Autores principales: Suwannatrai, Apiporn T., Thinkhamrop, Kavin, Clements, Archie C. A., Kelly, Matthew, Suwannatrai, Kulwadee, Thinkhamrop, Bandit, Khuntikeo, Narong, Gray, Darren J., Wangdi, Kinley
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776517/
https://www.ncbi.nlm.nih.gov/pubmed/31582774
http://dx.doi.org/10.1038/s41598-019-50476-7
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author Suwannatrai, Apiporn T.
Thinkhamrop, Kavin
Clements, Archie C. A.
Kelly, Matthew
Suwannatrai, Kulwadee
Thinkhamrop, Bandit
Khuntikeo, Narong
Gray, Darren J.
Wangdi, Kinley
author_facet Suwannatrai, Apiporn T.
Thinkhamrop, Kavin
Clements, Archie C. A.
Kelly, Matthew
Suwannatrai, Kulwadee
Thinkhamrop, Bandit
Khuntikeo, Narong
Gray, Darren J.
Wangdi, Kinley
author_sort Suwannatrai, Apiporn T.
collection PubMed
description Cholangiocarcinoma (CCA) is a malignant neoplasm of the biliary tract. Thailand reports the highest incidence of CCA in the world. The aim of this study was to map the distribution of CCA and identify spatial disease clusters in Northeast Thailand. Individual-level data of patients with histopathologically confirmed CCA, aggregated at the sub-district level, were obtained from the Cholangiocarcinoma Screening and Care Program (CASCAP) between February 2013 and December 2017. For analysis a multivariate Zero-inflated, Poisson (ZIP) regression model was developed. This model incorporated a conditional autoregressive (CAR) prior structure, with posterior parameters estimated using Bayesian Markov chain Monte Carlo (MCMC) simulation with Gibbs sampling. Covariates included in the models were age, sex, normalized vegetation index (NDVI), and distance to water body. There was a total of 1,299 cases out of 358,981 participants. CCA incidence increased 2.94 fold (95% credible interval [CrI] 2.62–3.31) in patients >60 years as compared to ≤60 years. Males were 2.53 fold (95% CrI: 2.24–2.85) more likely to have CCA when compared to females. CCA decreased with a 1 unit increase of NDVI (Relative Risk =0.06; 95% CrI: 0.01–0.63). When posterior means were mapped spatial clustering was evident after accounting for the model covariates. Age, sex and environmental variables were associated with an increase in the incidence of CCA. When these covariates were included in models the maps of the posterior means of the spatially structured random effects demonstrated evidence of spatial clustering.
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spelling pubmed-67765172019-10-09 Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand Suwannatrai, Apiporn T. Thinkhamrop, Kavin Clements, Archie C. A. Kelly, Matthew Suwannatrai, Kulwadee Thinkhamrop, Bandit Khuntikeo, Narong Gray, Darren J. Wangdi, Kinley Sci Rep Article Cholangiocarcinoma (CCA) is a malignant neoplasm of the biliary tract. Thailand reports the highest incidence of CCA in the world. The aim of this study was to map the distribution of CCA and identify spatial disease clusters in Northeast Thailand. Individual-level data of patients with histopathologically confirmed CCA, aggregated at the sub-district level, were obtained from the Cholangiocarcinoma Screening and Care Program (CASCAP) between February 2013 and December 2017. For analysis a multivariate Zero-inflated, Poisson (ZIP) regression model was developed. This model incorporated a conditional autoregressive (CAR) prior structure, with posterior parameters estimated using Bayesian Markov chain Monte Carlo (MCMC) simulation with Gibbs sampling. Covariates included in the models were age, sex, normalized vegetation index (NDVI), and distance to water body. There was a total of 1,299 cases out of 358,981 participants. CCA incidence increased 2.94 fold (95% credible interval [CrI] 2.62–3.31) in patients >60 years as compared to ≤60 years. Males were 2.53 fold (95% CrI: 2.24–2.85) more likely to have CCA when compared to females. CCA decreased with a 1 unit increase of NDVI (Relative Risk =0.06; 95% CrI: 0.01–0.63). When posterior means were mapped spatial clustering was evident after accounting for the model covariates. Age, sex and environmental variables were associated with an increase in the incidence of CCA. When these covariates were included in models the maps of the posterior means of the spatially structured random effects demonstrated evidence of spatial clustering. Nature Publishing Group UK 2019-10-03 /pmc/articles/PMC6776517/ /pubmed/31582774 http://dx.doi.org/10.1038/s41598-019-50476-7 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Suwannatrai, Apiporn T.
Thinkhamrop, Kavin
Clements, Archie C. A.
Kelly, Matthew
Suwannatrai, Kulwadee
Thinkhamrop, Bandit
Khuntikeo, Narong
Gray, Darren J.
Wangdi, Kinley
Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand
title Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand
title_full Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand
title_fullStr Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand
title_full_unstemmed Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand
title_short Bayesian spatial analysis of cholangiocarcinoma in Northeast Thailand
title_sort bayesian spatial analysis of cholangiocarcinoma in northeast thailand
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6776517/
https://www.ncbi.nlm.nih.gov/pubmed/31582774
http://dx.doi.org/10.1038/s41598-019-50476-7
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