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High-resolution limited-angle phase tomography of dense layered objects using deep neural networks

We present a machine learning-based method for tomographic reconstruction of dense layered objects, with range of projection angles limited to [Formula: see text]. Whereas previous approaches to phase tomography generally require 2 steps, first to retrieve phase projections from intensity projection...

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Autores principales: Goy, Alexandre, Rughoobur, Girish, Li, Shuai, Arthur, Kwabena, Akinwande, Akintunde I., Barbastathis, George
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778227/
https://www.ncbi.nlm.nih.gov/pubmed/31527279
http://dx.doi.org/10.1073/pnas.1821378116
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author Goy, Alexandre
Rughoobur, Girish
Li, Shuai
Arthur, Kwabena
Akinwande, Akintunde I.
Barbastathis, George
author_facet Goy, Alexandre
Rughoobur, Girish
Li, Shuai
Arthur, Kwabena
Akinwande, Akintunde I.
Barbastathis, George
author_sort Goy, Alexandre
collection PubMed
description We present a machine learning-based method for tomographic reconstruction of dense layered objects, with range of projection angles limited to [Formula: see text]. Whereas previous approaches to phase tomography generally require 2 steps, first to retrieve phase projections from intensity projections and then to perform tomographic reconstruction on the retrieved phase projections, in our work a physics-informed preprocessor followed by a deep neural network (DNN) conduct the 3-dimensional reconstruction directly from the intensity projections. We demonstrate this single-step method experimentally in the visible optical domain on a scaled-up integrated circuit phantom. We show that even under conditions of highly attenuated photon fluxes a DNN trained only on synthetic data can be used to successfully reconstruct physical samples disjoint from the synthetic training set. Thus, the need for producing a large number of physical examples for training is ameliorated. The method is generally applicable to tomography with electromagnetic or other types of radiation at all bands.
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spelling pubmed-67782272019-10-09 High-resolution limited-angle phase tomography of dense layered objects using deep neural networks Goy, Alexandre Rughoobur, Girish Li, Shuai Arthur, Kwabena Akinwande, Akintunde I. Barbastathis, George Proc Natl Acad Sci U S A PNAS Plus We present a machine learning-based method for tomographic reconstruction of dense layered objects, with range of projection angles limited to [Formula: see text]. Whereas previous approaches to phase tomography generally require 2 steps, first to retrieve phase projections from intensity projections and then to perform tomographic reconstruction on the retrieved phase projections, in our work a physics-informed preprocessor followed by a deep neural network (DNN) conduct the 3-dimensional reconstruction directly from the intensity projections. We demonstrate this single-step method experimentally in the visible optical domain on a scaled-up integrated circuit phantom. We show that even under conditions of highly attenuated photon fluxes a DNN trained only on synthetic data can be used to successfully reconstruct physical samples disjoint from the synthetic training set. Thus, the need for producing a large number of physical examples for training is ameliorated. The method is generally applicable to tomography with electromagnetic or other types of radiation at all bands. National Academy of Sciences 2019-10-01 2019-09-16 /pmc/articles/PMC6778227/ /pubmed/31527279 http://dx.doi.org/10.1073/pnas.1821378116 Text en Copyright © 2019 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle PNAS Plus
Goy, Alexandre
Rughoobur, Girish
Li, Shuai
Arthur, Kwabena
Akinwande, Akintunde I.
Barbastathis, George
High-resolution limited-angle phase tomography of dense layered objects using deep neural networks
title High-resolution limited-angle phase tomography of dense layered objects using deep neural networks
title_full High-resolution limited-angle phase tomography of dense layered objects using deep neural networks
title_fullStr High-resolution limited-angle phase tomography of dense layered objects using deep neural networks
title_full_unstemmed High-resolution limited-angle phase tomography of dense layered objects using deep neural networks
title_short High-resolution limited-angle phase tomography of dense layered objects using deep neural networks
title_sort high-resolution limited-angle phase tomography of dense layered objects using deep neural networks
topic PNAS Plus
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6778227/
https://www.ncbi.nlm.nih.gov/pubmed/31527279
http://dx.doi.org/10.1073/pnas.1821378116
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