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Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions
Estimating causal interactions in the brain from functional magnetic resonance imaging (fMRI) data remains a challenging task. Multiple studies have demonstrated that all current approaches to determine direction of connectivity perform poorly when applied to synthetic fMRI datasets. Recent advances...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6779268/ https://www.ncbi.nlm.nih.gov/pubmed/31637336 http://dx.doi.org/10.1162/netn_a_00099 |
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author | Bielczyk, Natalia Z. Llera, Alberto Buitelaar, Jan K. Glennon, Jeffrey C. Beckmann, Christian F. |
author_facet | Bielczyk, Natalia Z. Llera, Alberto Buitelaar, Jan K. Glennon, Jeffrey C. Beckmann, Christian F. |
author_sort | Bielczyk, Natalia Z. |
collection | PubMed |
description | Estimating causal interactions in the brain from functional magnetic resonance imaging (fMRI) data remains a challenging task. Multiple studies have demonstrated that all current approaches to determine direction of connectivity perform poorly when applied to synthetic fMRI datasets. Recent advances in this field include methods for pairwise inference, which involve creating a sparse connectome in the first step, and then using a classifier in order to determine the directionality of connection between every pair of nodes in the second step. In this work, we introduce an advance to the second step of this procedure, by building a classifier based on fractional moments of the BOLD distribution combined into cumulants. The classifier is trained on datasets generated under the dynamic causal modeling (DCM) generative model. The directionality is inferred based on statistical dependencies between the two-node time series, for example, by assigning a causal link from time series of low variance to time series of high variance. Our approach outperforms or performs as well as other methods for effective connectivity when applied to the benchmark datasets. Crucially, it is also more resilient to confounding effects such as differential noise level across different areas of the connectome. |
format | Online Article Text |
id | pubmed-6779268 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-67792682019-10-21 Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions Bielczyk, Natalia Z. Llera, Alberto Buitelaar, Jan K. Glennon, Jeffrey C. Beckmann, Christian F. Netw Neurosci Methods Estimating causal interactions in the brain from functional magnetic resonance imaging (fMRI) data remains a challenging task. Multiple studies have demonstrated that all current approaches to determine direction of connectivity perform poorly when applied to synthetic fMRI datasets. Recent advances in this field include methods for pairwise inference, which involve creating a sparse connectome in the first step, and then using a classifier in order to determine the directionality of connection between every pair of nodes in the second step. In this work, we introduce an advance to the second step of this procedure, by building a classifier based on fractional moments of the BOLD distribution combined into cumulants. The classifier is trained on datasets generated under the dynamic causal modeling (DCM) generative model. The directionality is inferred based on statistical dependencies between the two-node time series, for example, by assigning a causal link from time series of low variance to time series of high variance. Our approach outperforms or performs as well as other methods for effective connectivity when applied to the benchmark datasets. Crucially, it is also more resilient to confounding effects such as differential noise level across different areas of the connectome. MIT Press 2019-09-01 /pmc/articles/PMC6779268/ /pubmed/31637336 http://dx.doi.org/10.1162/netn_a_00099 Text en © 2019 Massachusetts Institute of Technology This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/legalcode. |
spellingShingle | Methods Bielczyk, Natalia Z. Llera, Alberto Buitelaar, Jan K. Glennon, Jeffrey C. Beckmann, Christian F. Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions |
title | Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions |
title_full | Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions |
title_fullStr | Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions |
title_full_unstemmed | Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions |
title_short | Increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of BOLD signal distributions |
title_sort | increasing robustness of pairwise methods for effective connectivity in magnetic resonance imaging by using fractional moment series of bold signal distributions |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6779268/ https://www.ncbi.nlm.nih.gov/pubmed/31637336 http://dx.doi.org/10.1162/netn_a_00099 |
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