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Phylogeny of the subgenus Eumitria in Tanzania

Several Usnea species in subgenus Eumitria (Parmeliaceae, lichenized Ascomycota) have been described from East Africa in the past decades. These have been based on morphology and chemistry data while molecular studies remain very limited. In this paper we are for the first time publishing phylogenet...

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Autores principales: Temu, Stella G., Clerc, Philippe, Tibell, Leif, Tibuhwa, Donatha D., Tibell, Sanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781463/
https://www.ncbi.nlm.nih.gov/pubmed/31632834
http://dx.doi.org/10.1080/21501203.2019.1635217
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author Temu, Stella G.
Clerc, Philippe
Tibell, Leif
Tibuhwa, Donatha D.
Tibell, Sanja
author_facet Temu, Stella G.
Clerc, Philippe
Tibell, Leif
Tibuhwa, Donatha D.
Tibell, Sanja
author_sort Temu, Stella G.
collection PubMed
description Several Usnea species in subgenus Eumitria (Parmeliaceae, lichenized Ascomycota) have been described from East Africa in the past decades. These have been based on morphology and chemistry data while molecular studies remain very limited. In this paper we are for the first time publishing phylogenetic analyses along with morphological and chemical data for Eumitria. ‬A total of 62 new sequences of Eumitria (26 ITS, 20 nuLSU, 6 MCM7, 10 RPB1) were generated in this study. nuLSU, MCM7 and RPB1 sequences are here for the first time reported for U. baileyi. A phylogeny of subgenus Eumitria from Tanzania based on Bayesian and maximum likelihood analyses of a concatenated four-loci data set is presented, confirming the monophyly of Eumitria. Further, secondary chemistry and variation in characters, such as the pigmentation of the central axis and branch shape were investigated.
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spelling pubmed-67814632019-10-18 Phylogeny of the subgenus Eumitria in Tanzania Temu, Stella G. Clerc, Philippe Tibell, Leif Tibuhwa, Donatha D. Tibell, Sanja Mycology Article Several Usnea species in subgenus Eumitria (Parmeliaceae, lichenized Ascomycota) have been described from East Africa in the past decades. These have been based on morphology and chemistry data while molecular studies remain very limited. In this paper we are for the first time publishing phylogenetic analyses along with morphological and chemical data for Eumitria. ‬A total of 62 new sequences of Eumitria (26 ITS, 20 nuLSU, 6 MCM7, 10 RPB1) were generated in this study. nuLSU, MCM7 and RPB1 sequences are here for the first time reported for U. baileyi. A phylogeny of subgenus Eumitria from Tanzania based on Bayesian and maximum likelihood analyses of a concatenated four-loci data set is presented, confirming the monophyly of Eumitria. Further, secondary chemistry and variation in characters, such as the pigmentation of the central axis and branch shape were investigated. Taylor & Francis 2019-06-30 /pmc/articles/PMC6781463/ /pubmed/31632834 http://dx.doi.org/10.1080/21501203.2019.1635217 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Article
Temu, Stella G.
Clerc, Philippe
Tibell, Leif
Tibuhwa, Donatha D.
Tibell, Sanja
Phylogeny of the subgenus Eumitria in Tanzania
title Phylogeny of the subgenus Eumitria in Tanzania
title_full Phylogeny of the subgenus Eumitria in Tanzania
title_fullStr Phylogeny of the subgenus Eumitria in Tanzania
title_full_unstemmed Phylogeny of the subgenus Eumitria in Tanzania
title_short Phylogeny of the subgenus Eumitria in Tanzania
title_sort phylogeny of the subgenus eumitria in tanzania
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781463/
https://www.ncbi.nlm.nih.gov/pubmed/31632834
http://dx.doi.org/10.1080/21501203.2019.1635217
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