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Phylogeny of the subgenus Eumitria in Tanzania
Several Usnea species in subgenus Eumitria (Parmeliaceae, lichenized Ascomycota) have been described from East Africa in the past decades. These have been based on morphology and chemistry data while molecular studies remain very limited. In this paper we are for the first time publishing phylogenet...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781463/ https://www.ncbi.nlm.nih.gov/pubmed/31632834 http://dx.doi.org/10.1080/21501203.2019.1635217 |
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author | Temu, Stella G. Clerc, Philippe Tibell, Leif Tibuhwa, Donatha D. Tibell, Sanja |
author_facet | Temu, Stella G. Clerc, Philippe Tibell, Leif Tibuhwa, Donatha D. Tibell, Sanja |
author_sort | Temu, Stella G. |
collection | PubMed |
description | Several Usnea species in subgenus Eumitria (Parmeliaceae, lichenized Ascomycota) have been described from East Africa in the past decades. These have been based on morphology and chemistry data while molecular studies remain very limited. In this paper we are for the first time publishing phylogenetic analyses along with morphological and chemical data for Eumitria. A total of 62 new sequences of Eumitria (26 ITS, 20 nuLSU, 6 MCM7, 10 RPB1) were generated in this study. nuLSU, MCM7 and RPB1 sequences are here for the first time reported for U. baileyi. A phylogeny of subgenus Eumitria from Tanzania based on Bayesian and maximum likelihood analyses of a concatenated four-loci data set is presented, confirming the monophyly of Eumitria. Further, secondary chemistry and variation in characters, such as the pigmentation of the central axis and branch shape were investigated. |
format | Online Article Text |
id | pubmed-6781463 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-67814632019-10-18 Phylogeny of the subgenus Eumitria in Tanzania Temu, Stella G. Clerc, Philippe Tibell, Leif Tibuhwa, Donatha D. Tibell, Sanja Mycology Article Several Usnea species in subgenus Eumitria (Parmeliaceae, lichenized Ascomycota) have been described from East Africa in the past decades. These have been based on morphology and chemistry data while molecular studies remain very limited. In this paper we are for the first time publishing phylogenetic analyses along with morphological and chemical data for Eumitria. A total of 62 new sequences of Eumitria (26 ITS, 20 nuLSU, 6 MCM7, 10 RPB1) were generated in this study. nuLSU, MCM7 and RPB1 sequences are here for the first time reported for U. baileyi. A phylogeny of subgenus Eumitria from Tanzania based on Bayesian and maximum likelihood analyses of a concatenated four-loci data set is presented, confirming the monophyly of Eumitria. Further, secondary chemistry and variation in characters, such as the pigmentation of the central axis and branch shape were investigated. Taylor & Francis 2019-06-30 /pmc/articles/PMC6781463/ /pubmed/31632834 http://dx.doi.org/10.1080/21501203.2019.1635217 Text en © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Article Temu, Stella G. Clerc, Philippe Tibell, Leif Tibuhwa, Donatha D. Tibell, Sanja Phylogeny of the subgenus Eumitria in Tanzania |
title | Phylogeny of the subgenus Eumitria in Tanzania |
title_full | Phylogeny of the subgenus Eumitria in Tanzania |
title_fullStr | Phylogeny of the subgenus Eumitria in Tanzania |
title_full_unstemmed | Phylogeny of the subgenus Eumitria in Tanzania |
title_short | Phylogeny of the subgenus Eumitria in Tanzania |
title_sort | phylogeny of the subgenus eumitria in tanzania |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781463/ https://www.ncbi.nlm.nih.gov/pubmed/31632834 http://dx.doi.org/10.1080/21501203.2019.1635217 |
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