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Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis
Adrenocortical carcinoma (ACC) is a rare malignancy with a poor prognosis. The presently available understanding of the pathogenesis of ACC is incomplete and the treatment options for patients with ACC are limited. Gene marker identification is required for accurate and timely diagnosis of the disea...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781718/ https://www.ncbi.nlm.nih.gov/pubmed/31611976 http://dx.doi.org/10.3892/ol.2019.10817 |
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author | Xing, Zengmiao Luo, Zuojie Yang, Haiyan Huang, Zhenxing Liang, Xinghuan |
author_facet | Xing, Zengmiao Luo, Zuojie Yang, Haiyan Huang, Zhenxing Liang, Xinghuan |
author_sort | Xing, Zengmiao |
collection | PubMed |
description | Adrenocortical carcinoma (ACC) is a rare malignancy with a poor prognosis. The presently available understanding of the pathogenesis of ACC is incomplete and the treatment options for patients with ACC are limited. Gene marker identification is required for accurate and timely diagnosis of the disease. In order to identify novel candidate genes associated with the occurrence and progression of ACC, the microarray datasets, GSE12368 and GSE19750, were obtained from Gene Expression Omnibus. Differentially expressed genes (DEGs) were identified, and functional enrichment analysis was performed. A protein-protein interaction network (PPI) was constructed to identify significantly altered modules, and module analysis was performed using Search Tool for the Retrieval of Interacting Genes and Cytoscape. A total of 228 DEGs were screened, consisting of 29 up and 199 downregulated genes. The enriched functions and pathways of the DEGs primarily included ‘cell division’, ‘regulation of transcription involved in G1/S transition of mitotic cell cycle’, ‘G1/S transition of mitotic cell cycle’, ‘p53 signaling pathway’ and ‘oocyte meiosis’. A total of 14 hub genes were identified, and biological process analysis revealed that these genes were significantly enriched in cell division and mitotic cell cycle. Furthermore, survival analysis revealed that AURKA, TYMS, GINS1, RACGAP1, RRM2, EZH2, ZWINT, CDK1, CCNB1, NCAPG and TPX2 may be involved in the tumorigenesis, progression or prognosis of ACC. In conclusion, the 14 hub genes identified in the present study may aid researchers in elucidating the molecular mechanisms associated with the tumorigenesis and progression of ACC, and may be powerful and promising candidate biomarkers for the diagnosis and treatment of ACC. |
format | Online Article Text |
id | pubmed-6781718 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-67817182019-10-14 Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis Xing, Zengmiao Luo, Zuojie Yang, Haiyan Huang, Zhenxing Liang, Xinghuan Oncol Lett Articles Adrenocortical carcinoma (ACC) is a rare malignancy with a poor prognosis. The presently available understanding of the pathogenesis of ACC is incomplete and the treatment options for patients with ACC are limited. Gene marker identification is required for accurate and timely diagnosis of the disease. In order to identify novel candidate genes associated with the occurrence and progression of ACC, the microarray datasets, GSE12368 and GSE19750, were obtained from Gene Expression Omnibus. Differentially expressed genes (DEGs) were identified, and functional enrichment analysis was performed. A protein-protein interaction network (PPI) was constructed to identify significantly altered modules, and module analysis was performed using Search Tool for the Retrieval of Interacting Genes and Cytoscape. A total of 228 DEGs were screened, consisting of 29 up and 199 downregulated genes. The enriched functions and pathways of the DEGs primarily included ‘cell division’, ‘regulation of transcription involved in G1/S transition of mitotic cell cycle’, ‘G1/S transition of mitotic cell cycle’, ‘p53 signaling pathway’ and ‘oocyte meiosis’. A total of 14 hub genes were identified, and biological process analysis revealed that these genes were significantly enriched in cell division and mitotic cell cycle. Furthermore, survival analysis revealed that AURKA, TYMS, GINS1, RACGAP1, RRM2, EZH2, ZWINT, CDK1, CCNB1, NCAPG and TPX2 may be involved in the tumorigenesis, progression or prognosis of ACC. In conclusion, the 14 hub genes identified in the present study may aid researchers in elucidating the molecular mechanisms associated with the tumorigenesis and progression of ACC, and may be powerful and promising candidate biomarkers for the diagnosis and treatment of ACC. D.A. Spandidos 2019-11 2019-09-06 /pmc/articles/PMC6781718/ /pubmed/31611976 http://dx.doi.org/10.3892/ol.2019.10817 Text en Copyright: © Xing et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Xing, Zengmiao Luo, Zuojie Yang, Haiyan Huang, Zhenxing Liang, Xinghuan Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
title | Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
title_full | Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
title_fullStr | Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
title_full_unstemmed | Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
title_short | Screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
title_sort | screening and identification of key biomarkers in adrenocortical carcinoma based on bioinformatics analysis |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6781718/ https://www.ncbi.nlm.nih.gov/pubmed/31611976 http://dx.doi.org/10.3892/ol.2019.10817 |
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