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Predicting translational progress in biomedical research

Fundamental scientific advances can take decades to translate into improvements in human health. Shortening this interval would increase the rate at which scientific discoveries lead to successful treatment of human disease. One way to accomplish this would be to identify which advances in knowledge...

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Detalles Bibliográficos
Autores principales: Hutchins, B. Ian, Davis, Matthew T., Meseroll, Rebecca A., Santangelo, George M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6786525/
https://www.ncbi.nlm.nih.gov/pubmed/31600189
http://dx.doi.org/10.1371/journal.pbio.3000416
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author Hutchins, B. Ian
Davis, Matthew T.
Meseroll, Rebecca A.
Santangelo, George M.
author_facet Hutchins, B. Ian
Davis, Matthew T.
Meseroll, Rebecca A.
Santangelo, George M.
author_sort Hutchins, B. Ian
collection PubMed
description Fundamental scientific advances can take decades to translate into improvements in human health. Shortening this interval would increase the rate at which scientific discoveries lead to successful treatment of human disease. One way to accomplish this would be to identify which advances in knowledge are most likely to translate into clinical research. Toward that end, we built a machine learning system that detects whether a paper is likely to be cited by a future clinical trial or guideline. Despite the noisiness of citation dynamics, as little as 2 years of postpublication data yield accurate predictions about a paper’s eventual citation by a clinical article (accuracy = 84%, F1 score = 0.56; compared to 19% accuracy by chance). We found that distinct knowledge flow trajectories are linked to papers that either succeed or fail to influence clinical research. Translational progress in biomedicine can therefore be assessed and predicted in real time based on information conveyed by the scientific community’s early reaction to a paper.
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spelling pubmed-67865252019-10-20 Predicting translational progress in biomedical research Hutchins, B. Ian Davis, Matthew T. Meseroll, Rebecca A. Santangelo, George M. PLoS Biol Meta-Research Article Fundamental scientific advances can take decades to translate into improvements in human health. Shortening this interval would increase the rate at which scientific discoveries lead to successful treatment of human disease. One way to accomplish this would be to identify which advances in knowledge are most likely to translate into clinical research. Toward that end, we built a machine learning system that detects whether a paper is likely to be cited by a future clinical trial or guideline. Despite the noisiness of citation dynamics, as little as 2 years of postpublication data yield accurate predictions about a paper’s eventual citation by a clinical article (accuracy = 84%, F1 score = 0.56; compared to 19% accuracy by chance). We found that distinct knowledge flow trajectories are linked to papers that either succeed or fail to influence clinical research. Translational progress in biomedicine can therefore be assessed and predicted in real time based on information conveyed by the scientific community’s early reaction to a paper. Public Library of Science 2019-10-10 /pmc/articles/PMC6786525/ /pubmed/31600189 http://dx.doi.org/10.1371/journal.pbio.3000416 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Meta-Research Article
Hutchins, B. Ian
Davis, Matthew T.
Meseroll, Rebecca A.
Santangelo, George M.
Predicting translational progress in biomedical research
title Predicting translational progress in biomedical research
title_full Predicting translational progress in biomedical research
title_fullStr Predicting translational progress in biomedical research
title_full_unstemmed Predicting translational progress in biomedical research
title_short Predicting translational progress in biomedical research
title_sort predicting translational progress in biomedical research
topic Meta-Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6786525/
https://www.ncbi.nlm.nih.gov/pubmed/31600189
http://dx.doi.org/10.1371/journal.pbio.3000416
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