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Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis

Circular RNAs (circRNAs) are becoming new therapeutic drug targets. However, their profiles under astilbin treatment have not been reported yet. In this study, we analysed the global reprogramming of circRNA transcriptome and a regulatory network of circRNAs with their targeted genes under astilbin...

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Autores principales: Lu, Guangping, Zhang, Jinjin, Liu, Xiangyong, Liu, Wenbo, Cao, Guohong, Lv, Changjun, Zhang, Xiaoli, Xu, Pan, Li, Minge, Song, Xiaodong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6787462/
https://www.ncbi.nlm.nih.gov/pubmed/31448882
http://dx.doi.org/10.1111/jcmm.14550
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author Lu, Guangping
Zhang, Jinjin
Liu, Xiangyong
Liu, Wenbo
Cao, Guohong
Lv, Changjun
Zhang, Xiaoli
Xu, Pan
Li, Minge
Song, Xiaodong
author_facet Lu, Guangping
Zhang, Jinjin
Liu, Xiangyong
Liu, Wenbo
Cao, Guohong
Lv, Changjun
Zhang, Xiaoli
Xu, Pan
Li, Minge
Song, Xiaodong
author_sort Lu, Guangping
collection PubMed
description Circular RNAs (circRNAs) are becoming new therapeutic drug targets. However, their profiles under astilbin treatment have not been reported yet. In this study, we analysed the global reprogramming of circRNA transcriptome and a regulatory network of circRNAs with their targeted genes under astilbin treatment in pulmonary fibrosis. A total of 145 circRNAs were differentially expressed in the astilbin‐treated group compared with the bleomycin‐treated group using RNA sequencing. In the bleomycin‐ and astilbin‐treated groups, 29 coexpressed circRNAs were found. The maximum number of circRNAs was distributed on chromosome two, and their length varieties were mainly within 1000 bp. Four differentially expressed circRNAs (circRNA‐662, 949, 394 and 986) were tested to validate the RNA sequencing data, and their targeted microRNAs and genes were analysed by qRT‐PCR, Western blot, Pearson correlation coefficient, a dual‐luciferase reporter system and anti‐AGO(2) RNA immunoprecipitation. The results showed that circRNA‐662 and 949 can act as “miR‐29b sponges” targeting Gli2 and STAT3 to exert their functions. Our work suggests that the transcriptome complexity at the circRNA level under astilbin treatment. These circRNAs may be potential molecular targets for drug action.
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spelling pubmed-67874622019-10-17 Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis Lu, Guangping Zhang, Jinjin Liu, Xiangyong Liu, Wenbo Cao, Guohong Lv, Changjun Zhang, Xiaoli Xu, Pan Li, Minge Song, Xiaodong J Cell Mol Med Original Articles Circular RNAs (circRNAs) are becoming new therapeutic drug targets. However, their profiles under astilbin treatment have not been reported yet. In this study, we analysed the global reprogramming of circRNA transcriptome and a regulatory network of circRNAs with their targeted genes under astilbin treatment in pulmonary fibrosis. A total of 145 circRNAs were differentially expressed in the astilbin‐treated group compared with the bleomycin‐treated group using RNA sequencing. In the bleomycin‐ and astilbin‐treated groups, 29 coexpressed circRNAs were found. The maximum number of circRNAs was distributed on chromosome two, and their length varieties were mainly within 1000 bp. Four differentially expressed circRNAs (circRNA‐662, 949, 394 and 986) were tested to validate the RNA sequencing data, and their targeted microRNAs and genes were analysed by qRT‐PCR, Western blot, Pearson correlation coefficient, a dual‐luciferase reporter system and anti‐AGO(2) RNA immunoprecipitation. The results showed that circRNA‐662 and 949 can act as “miR‐29b sponges” targeting Gli2 and STAT3 to exert their functions. Our work suggests that the transcriptome complexity at the circRNA level under astilbin treatment. These circRNAs may be potential molecular targets for drug action. John Wiley and Sons Inc. 2019-08-26 2019-10 /pmc/articles/PMC6787462/ /pubmed/31448882 http://dx.doi.org/10.1111/jcmm.14550 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Lu, Guangping
Zhang, Jinjin
Liu, Xiangyong
Liu, Wenbo
Cao, Guohong
Lv, Changjun
Zhang, Xiaoli
Xu, Pan
Li, Minge
Song, Xiaodong
Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis
title Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis
title_full Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis
title_fullStr Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis
title_full_unstemmed Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis
title_short Regulatory network of two circRNAs and an miRNA with their targeted genes under astilbin treatment in pulmonary fibrosis
title_sort regulatory network of two circrnas and an mirna with their targeted genes under astilbin treatment in pulmonary fibrosis
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6787462/
https://www.ncbi.nlm.nih.gov/pubmed/31448882
http://dx.doi.org/10.1111/jcmm.14550
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