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Collinearity in ecological niche modeling: Confusions and challenges

Ecological niche models are widely used in ecology and biogeography. Maxent is one of the most frequently used niche modeling tools, and many studies have aimed to optimize its performance. However, scholars have conflicting views on the treatment of predictor collinearity in Maxent modeling. Despit...

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Autores principales: Feng, Xiao, Park, Daniel S., Liang, Ye, Pandey, Ranjit, Papeş, Monica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6787792/
https://www.ncbi.nlm.nih.gov/pubmed/31624555
http://dx.doi.org/10.1002/ece3.5555
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author Feng, Xiao
Park, Daniel S.
Liang, Ye
Pandey, Ranjit
Papeş, Monica
author_facet Feng, Xiao
Park, Daniel S.
Liang, Ye
Pandey, Ranjit
Papeş, Monica
author_sort Feng, Xiao
collection PubMed
description Ecological niche models are widely used in ecology and biogeography. Maxent is one of the most frequently used niche modeling tools, and many studies have aimed to optimize its performance. However, scholars have conflicting views on the treatment of predictor collinearity in Maxent modeling. Despite this lack of consensus, quantitative examinations of the effects of collinearity on Maxent modeling, especially in model transfer scenarios, are lacking. To address this knowledge gap, here we quantify the effects of collinearity under different scenarios of Maxent model training and projection. We separately examine the effects of predictor collinearity, collinearity shifts between training and testing data, and environmental novelty on model performance. We demonstrate that excluding highly correlated predictor variables does not significantly influence model performance. However, we find that collinearity shift and environmental novelty have significant negative effects on the performance of model transfer. We thus conclude that (a) Maxent is robust to predictor collinearity in model training; (b) the strategy of excluding highly correlated variables has little impact because Maxent accounts for redundant variables; and (c) collinearity shift and environmental novelty can negatively affect Maxent model transferability. We therefore recommend to quantify and report collinearity shift and environmental novelty to better infer model accuracy when models are spatially and/or temporally transferred.
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spelling pubmed-67877922019-10-17 Collinearity in ecological niche modeling: Confusions and challenges Feng, Xiao Park, Daniel S. Liang, Ye Pandey, Ranjit Papeş, Monica Ecol Evol Original Research Ecological niche models are widely used in ecology and biogeography. Maxent is one of the most frequently used niche modeling tools, and many studies have aimed to optimize its performance. However, scholars have conflicting views on the treatment of predictor collinearity in Maxent modeling. Despite this lack of consensus, quantitative examinations of the effects of collinearity on Maxent modeling, especially in model transfer scenarios, are lacking. To address this knowledge gap, here we quantify the effects of collinearity under different scenarios of Maxent model training and projection. We separately examine the effects of predictor collinearity, collinearity shifts between training and testing data, and environmental novelty on model performance. We demonstrate that excluding highly correlated predictor variables does not significantly influence model performance. However, we find that collinearity shift and environmental novelty have significant negative effects on the performance of model transfer. We thus conclude that (a) Maxent is robust to predictor collinearity in model training; (b) the strategy of excluding highly correlated variables has little impact because Maxent accounts for redundant variables; and (c) collinearity shift and environmental novelty can negatively affect Maxent model transferability. We therefore recommend to quantify and report collinearity shift and environmental novelty to better infer model accuracy when models are spatially and/or temporally transferred. John Wiley and Sons Inc. 2019-08-20 /pmc/articles/PMC6787792/ /pubmed/31624555 http://dx.doi.org/10.1002/ece3.5555 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Feng, Xiao
Park, Daniel S.
Liang, Ye
Pandey, Ranjit
Papeş, Monica
Collinearity in ecological niche modeling: Confusions and challenges
title Collinearity in ecological niche modeling: Confusions and challenges
title_full Collinearity in ecological niche modeling: Confusions and challenges
title_fullStr Collinearity in ecological niche modeling: Confusions and challenges
title_full_unstemmed Collinearity in ecological niche modeling: Confusions and challenges
title_short Collinearity in ecological niche modeling: Confusions and challenges
title_sort collinearity in ecological niche modeling: confusions and challenges
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6787792/
https://www.ncbi.nlm.nih.gov/pubmed/31624555
http://dx.doi.org/10.1002/ece3.5555
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