Cargando…
Predicting species occurrences with habitat network models
1. Biodiversity conservation requires modeling tools capable of predicting the presence or absence (i.e., occurrence‐state) of species in habitat patches. Local habitat characteristics of a patch (lh), the cost of traversing the landscape matrix between patches (weighted connectivity [wc]), and the...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6787819/ https://www.ncbi.nlm.nih.gov/pubmed/31624560 http://dx.doi.org/10.1002/ece3.5567 |
_version_ | 1783458362339360768 |
---|---|
author | Ortiz‐Rodríguez, Damian O. Guisan, Antoine Holderegger, Rolf van Strien, Maarten J. |
author_facet | Ortiz‐Rodríguez, Damian O. Guisan, Antoine Holderegger, Rolf van Strien, Maarten J. |
author_sort | Ortiz‐Rodríguez, Damian O. |
collection | PubMed |
description | 1. Biodiversity conservation requires modeling tools capable of predicting the presence or absence (i.e., occurrence‐state) of species in habitat patches. Local habitat characteristics of a patch (lh), the cost of traversing the landscape matrix between patches (weighted connectivity [wc]), and the position of the patch in the habitat network topology (nt) all influence occurrence‐state. Existing models are data demanding or consider only local habitat characteristics. We address these shortcomings and present a network‐based modeling approach, which aims to predict species occurrence‐state in habitat patches using readily available presence‐only records. 2. For the tree frog Hyla arborea in the Swiss Plateau, we delineated habitat network nodes from an ensemble habitat suitability model and used different cost surfaces to generate the edges of three networks: one limited only by dispersal distance (Uniform), another incorporating traffic, and a third based on inverse habitat suitability. For each network, we calculated explanatory variables representing the three categories (lh, wc, and nt). The response variable, occurrence‐state, was parametrized by a sampling intensity procedure assessing observations of comparable species over a threshold of patch visits. The explanatory variables from the three networks and an additional non‐topological model were related to the response variable with boosted regression trees. 3. The habitat network models had a similar fit; they all outperformed the non‐topological model. Habitat suitability index (lh) was the most important predictor in all networks, followed by third‐order neighborhood (nt). Patch size (lh) was unimportant in all three networks. 4. We found that topological variables of habitat networks are relevant for the prediction of species occurrence‐state, a step‐forward from models considering only local habitat characteristics. For any habitat patch, occurrence‐state is most prominently influenced by its habitat suitability and then by the number of patches in a wide neighborhood. Our approach is generic and can be applied to multiple species in different habitats. |
format | Online Article Text |
id | pubmed-6787819 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67878192019-10-17 Predicting species occurrences with habitat network models Ortiz‐Rodríguez, Damian O. Guisan, Antoine Holderegger, Rolf van Strien, Maarten J. Ecol Evol Original Research 1. Biodiversity conservation requires modeling tools capable of predicting the presence or absence (i.e., occurrence‐state) of species in habitat patches. Local habitat characteristics of a patch (lh), the cost of traversing the landscape matrix between patches (weighted connectivity [wc]), and the position of the patch in the habitat network topology (nt) all influence occurrence‐state. Existing models are data demanding or consider only local habitat characteristics. We address these shortcomings and present a network‐based modeling approach, which aims to predict species occurrence‐state in habitat patches using readily available presence‐only records. 2. For the tree frog Hyla arborea in the Swiss Plateau, we delineated habitat network nodes from an ensemble habitat suitability model and used different cost surfaces to generate the edges of three networks: one limited only by dispersal distance (Uniform), another incorporating traffic, and a third based on inverse habitat suitability. For each network, we calculated explanatory variables representing the three categories (lh, wc, and nt). The response variable, occurrence‐state, was parametrized by a sampling intensity procedure assessing observations of comparable species over a threshold of patch visits. The explanatory variables from the three networks and an additional non‐topological model were related to the response variable with boosted regression trees. 3. The habitat network models had a similar fit; they all outperformed the non‐topological model. Habitat suitability index (lh) was the most important predictor in all networks, followed by third‐order neighborhood (nt). Patch size (lh) was unimportant in all three networks. 4. We found that topological variables of habitat networks are relevant for the prediction of species occurrence‐state, a step‐forward from models considering only local habitat characteristics. For any habitat patch, occurrence‐state is most prominently influenced by its habitat suitability and then by the number of patches in a wide neighborhood. Our approach is generic and can be applied to multiple species in different habitats. John Wiley and Sons Inc. 2019-09-04 /pmc/articles/PMC6787819/ /pubmed/31624560 http://dx.doi.org/10.1002/ece3.5567 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Ortiz‐Rodríguez, Damian O. Guisan, Antoine Holderegger, Rolf van Strien, Maarten J. Predicting species occurrences with habitat network models |
title | Predicting species occurrences with habitat network models |
title_full | Predicting species occurrences with habitat network models |
title_fullStr | Predicting species occurrences with habitat network models |
title_full_unstemmed | Predicting species occurrences with habitat network models |
title_short | Predicting species occurrences with habitat network models |
title_sort | predicting species occurrences with habitat network models |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6787819/ https://www.ncbi.nlm.nih.gov/pubmed/31624560 http://dx.doi.org/10.1002/ece3.5567 |
work_keys_str_mv | AT ortizrodriguezdamiano predictingspeciesoccurrenceswithhabitatnetworkmodels AT guisanantoine predictingspeciesoccurrenceswithhabitatnetworkmodels AT holdereggerrolf predictingspeciesoccurrenceswithhabitatnetworkmodels AT vanstrienmaartenj predictingspeciesoccurrenceswithhabitatnetworkmodels |