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Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images

BACKGROUND: Grading of prostatic adenocarcinoma is based on the Gleason scoring system and the more recently established prognostic grade groups. Typically, prostate cancer grading is performed by pathologists based on the morphology of the tumor on hematoxylin and eosin (H and E) slides. In this st...

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Autores principales: Ren, Jian, Singer, Eric A., Sadimin, Evita, Foran, David J., Qi, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wolters Kluwer - Medknow 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6788183/
https://www.ncbi.nlm.nih.gov/pubmed/31620309
http://dx.doi.org/10.4103/jpi.jpi_85_18
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author Ren, Jian
Singer, Eric A.
Sadimin, Evita
Foran, David J.
Qi, Xin
author_facet Ren, Jian
Singer, Eric A.
Sadimin, Evita
Foran, David J.
Qi, Xin
author_sort Ren, Jian
collection PubMed
description BACKGROUND: Grading of prostatic adenocarcinoma is based on the Gleason scoring system and the more recently established prognostic grade groups. Typically, prostate cancer grading is performed by pathologists based on the morphology of the tumor on hematoxylin and eosin (H and E) slides. In this study, we investigated the histopathological image features with various survival models and attempted to study their correlations. METHODS: Three texture methods (speeded-up robust features, histogram of oriented gradient, and local binary pattern) and two convolutional neural network (CNN)-based methods were applied to quantify histopathological image features. Five survival models were assessed on those image features in the context with other prostate clinical prognostic factors, including primary and secondary Gleason patterns, prostate-specific antigen levels, age, and clinical tumor stages. RESULTS: Based on statistical comparisons among different image features with survival models, image features from CNN-based method with a recurrent neural network called CNN-long-short-term memory provided the highest hazard ratio of prostate cancer recurrence under Cox regression with an elastic net penalty. CONCLUSIONS: This approach outperformed the other image quantification methods listed above. Using this approach, patient outcomes were highly correlated with the histopathological image features of the tissue samples. In future studies, we plan to investigate the potential use of this approach for predicting recurrence in a wider range of cancer types.
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spelling pubmed-67881832019-10-16 Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images Ren, Jian Singer, Eric A. Sadimin, Evita Foran, David J. Qi, Xin J Pathol Inform Research Article BACKGROUND: Grading of prostatic adenocarcinoma is based on the Gleason scoring system and the more recently established prognostic grade groups. Typically, prostate cancer grading is performed by pathologists based on the morphology of the tumor on hematoxylin and eosin (H and E) slides. In this study, we investigated the histopathological image features with various survival models and attempted to study their correlations. METHODS: Three texture methods (speeded-up robust features, histogram of oriented gradient, and local binary pattern) and two convolutional neural network (CNN)-based methods were applied to quantify histopathological image features. Five survival models were assessed on those image features in the context with other prostate clinical prognostic factors, including primary and secondary Gleason patterns, prostate-specific antigen levels, age, and clinical tumor stages. RESULTS: Based on statistical comparisons among different image features with survival models, image features from CNN-based method with a recurrent neural network called CNN-long-short-term memory provided the highest hazard ratio of prostate cancer recurrence under Cox regression with an elastic net penalty. CONCLUSIONS: This approach outperformed the other image quantification methods listed above. Using this approach, patient outcomes were highly correlated with the histopathological image features of the tissue samples. In future studies, we plan to investigate the potential use of this approach for predicting recurrence in a wider range of cancer types. Wolters Kluwer - Medknow 2019-09-27 /pmc/articles/PMC6788183/ /pubmed/31620309 http://dx.doi.org/10.4103/jpi.jpi_85_18 Text en Copyright: © 2019 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Research Article
Ren, Jian
Singer, Eric A.
Sadimin, Evita
Foran, David J.
Qi, Xin
Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
title Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
title_full Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
title_fullStr Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
title_full_unstemmed Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
title_short Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
title_sort statistical analysis of survival models using feature quantification on prostate cancer histopathological images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6788183/
https://www.ncbi.nlm.nih.gov/pubmed/31620309
http://dx.doi.org/10.4103/jpi.jpi_85_18
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