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Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images
BACKGROUND: Grading of prostatic adenocarcinoma is based on the Gleason scoring system and the more recently established prognostic grade groups. Typically, prostate cancer grading is performed by pathologists based on the morphology of the tumor on hematoxylin and eosin (H and E) slides. In this st...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wolters Kluwer - Medknow
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6788183/ https://www.ncbi.nlm.nih.gov/pubmed/31620309 http://dx.doi.org/10.4103/jpi.jpi_85_18 |
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author | Ren, Jian Singer, Eric A. Sadimin, Evita Foran, David J. Qi, Xin |
author_facet | Ren, Jian Singer, Eric A. Sadimin, Evita Foran, David J. Qi, Xin |
author_sort | Ren, Jian |
collection | PubMed |
description | BACKGROUND: Grading of prostatic adenocarcinoma is based on the Gleason scoring system and the more recently established prognostic grade groups. Typically, prostate cancer grading is performed by pathologists based on the morphology of the tumor on hematoxylin and eosin (H and E) slides. In this study, we investigated the histopathological image features with various survival models and attempted to study their correlations. METHODS: Three texture methods (speeded-up robust features, histogram of oriented gradient, and local binary pattern) and two convolutional neural network (CNN)-based methods were applied to quantify histopathological image features. Five survival models were assessed on those image features in the context with other prostate clinical prognostic factors, including primary and secondary Gleason patterns, prostate-specific antigen levels, age, and clinical tumor stages. RESULTS: Based on statistical comparisons among different image features with survival models, image features from CNN-based method with a recurrent neural network called CNN-long-short-term memory provided the highest hazard ratio of prostate cancer recurrence under Cox regression with an elastic net penalty. CONCLUSIONS: This approach outperformed the other image quantification methods listed above. Using this approach, patient outcomes were highly correlated with the histopathological image features of the tissue samples. In future studies, we plan to investigate the potential use of this approach for predicting recurrence in a wider range of cancer types. |
format | Online Article Text |
id | pubmed-6788183 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Wolters Kluwer - Medknow |
record_format | MEDLINE/PubMed |
spelling | pubmed-67881832019-10-16 Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images Ren, Jian Singer, Eric A. Sadimin, Evita Foran, David J. Qi, Xin J Pathol Inform Research Article BACKGROUND: Grading of prostatic adenocarcinoma is based on the Gleason scoring system and the more recently established prognostic grade groups. Typically, prostate cancer grading is performed by pathologists based on the morphology of the tumor on hematoxylin and eosin (H and E) slides. In this study, we investigated the histopathological image features with various survival models and attempted to study their correlations. METHODS: Three texture methods (speeded-up robust features, histogram of oriented gradient, and local binary pattern) and two convolutional neural network (CNN)-based methods were applied to quantify histopathological image features. Five survival models were assessed on those image features in the context with other prostate clinical prognostic factors, including primary and secondary Gleason patterns, prostate-specific antigen levels, age, and clinical tumor stages. RESULTS: Based on statistical comparisons among different image features with survival models, image features from CNN-based method with a recurrent neural network called CNN-long-short-term memory provided the highest hazard ratio of prostate cancer recurrence under Cox regression with an elastic net penalty. CONCLUSIONS: This approach outperformed the other image quantification methods listed above. Using this approach, patient outcomes were highly correlated with the histopathological image features of the tissue samples. In future studies, we plan to investigate the potential use of this approach for predicting recurrence in a wider range of cancer types. Wolters Kluwer - Medknow 2019-09-27 /pmc/articles/PMC6788183/ /pubmed/31620309 http://dx.doi.org/10.4103/jpi.jpi_85_18 Text en Copyright: © 2019 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Research Article Ren, Jian Singer, Eric A. Sadimin, Evita Foran, David J. Qi, Xin Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images |
title | Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images |
title_full | Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images |
title_fullStr | Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images |
title_full_unstemmed | Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images |
title_short | Statistical Analysis of Survival Models Using Feature Quantification on Prostate Cancer Histopathological Images |
title_sort | statistical analysis of survival models using feature quantification on prostate cancer histopathological images |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6788183/ https://www.ncbi.nlm.nih.gov/pubmed/31620309 http://dx.doi.org/10.4103/jpi.jpi_85_18 |
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