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Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review

Mycobacterium tuberculosis (Mtb) is an endemic bacterium worldwide that causes tuberculosis (TB) and involves long-term treatment that is not always effective. In this context, several studies are trying to develop and evaluate new substances active against Mtb. In silico techniques are often used t...

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Autores principales: Timo, Giulia Oliveira, dos Reis, Rodrigo Souza Silva Valle, de Melo, Adriana Françozo, Costa, Thales Viana Labourdette, Magalhães, Pérola de Oliveira, Homem-de-Mello, Mauricio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6789803/
https://www.ncbi.nlm.nih.gov/pubmed/31527425
http://dx.doi.org/10.3390/ph12030135
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author Timo, Giulia Oliveira
dos Reis, Rodrigo Souza Silva Valle
de Melo, Adriana Françozo
Costa, Thales Viana Labourdette
Magalhães, Pérola de Oliveira
Homem-de-Mello, Mauricio
author_facet Timo, Giulia Oliveira
dos Reis, Rodrigo Souza Silva Valle
de Melo, Adriana Françozo
Costa, Thales Viana Labourdette
Magalhães, Pérola de Oliveira
Homem-de-Mello, Mauricio
author_sort Timo, Giulia Oliveira
collection PubMed
description Mycobacterium tuberculosis (Mtb) is an endemic bacterium worldwide that causes tuberculosis (TB) and involves long-term treatment that is not always effective. In this context, several studies are trying to develop and evaluate new substances active against Mtb. In silico techniques are often used to predict the effects on some known target. We used a systematic approach to find and evaluate manuscripts that applied an in silico technique to find antimycobacterial molecules and tried to prove its predictive potential by testing them in vitro or in vivo. After searching three different databases and applying exclusion criteria, we were able to retrieve 46 documents. We found that they all follow a similar screening procedure, but few studies exploited equal targets, exploring the interaction of multiple ligands to 29 distinct enzymes. The following in vitro/vivo analysis showed that, although the virtual assays were able to decrease the number of molecules tested, saving time and money, virtual screening procedures still need to develop the correlation to more favorable in vitro outcomes. We find that the in silico approach has a good predictive power for in vitro results, but call for more studies to evaluate its clinical predictive possibilities.
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spelling pubmed-67898032019-10-16 Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review Timo, Giulia Oliveira dos Reis, Rodrigo Souza Silva Valle de Melo, Adriana Françozo Costa, Thales Viana Labourdette Magalhães, Pérola de Oliveira Homem-de-Mello, Mauricio Pharmaceuticals (Basel) Review Mycobacterium tuberculosis (Mtb) is an endemic bacterium worldwide that causes tuberculosis (TB) and involves long-term treatment that is not always effective. In this context, several studies are trying to develop and evaluate new substances active against Mtb. In silico techniques are often used to predict the effects on some known target. We used a systematic approach to find and evaluate manuscripts that applied an in silico technique to find antimycobacterial molecules and tried to prove its predictive potential by testing them in vitro or in vivo. After searching three different databases and applying exclusion criteria, we were able to retrieve 46 documents. We found that they all follow a similar screening procedure, but few studies exploited equal targets, exploring the interaction of multiple ligands to 29 distinct enzymes. The following in vitro/vivo analysis showed that, although the virtual assays were able to decrease the number of molecules tested, saving time and money, virtual screening procedures still need to develop the correlation to more favorable in vitro outcomes. We find that the in silico approach has a good predictive power for in vitro results, but call for more studies to evaluate its clinical predictive possibilities. MDPI 2019-09-16 /pmc/articles/PMC6789803/ /pubmed/31527425 http://dx.doi.org/10.3390/ph12030135 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Timo, Giulia Oliveira
dos Reis, Rodrigo Souza Silva Valle
de Melo, Adriana Françozo
Costa, Thales Viana Labourdette
Magalhães, Pérola de Oliveira
Homem-de-Mello, Mauricio
Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review
title Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review
title_full Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review
title_fullStr Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review
title_full_unstemmed Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review
title_short Predictive Power of In Silico Approach to Evaluate Chemicals against M. tuberculosis: A Systematic Review
title_sort predictive power of in silico approach to evaluate chemicals against m. tuberculosis: a systematic review
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6789803/
https://www.ncbi.nlm.nih.gov/pubmed/31527425
http://dx.doi.org/10.3390/ph12030135
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