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Progress in the study of genome size evolution in Asteraceae: analysis of the last update

The Genome Size in Asteraceae Database (GSAD, http://www.asteraceaegenomesize.com) has been recently updated, with data from papers published or in press until July 2018. This constitutes the third release of GSAD, currently containing 4350 data entries for 1496 species, which represent a growth of...

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Autores principales: Vitales, Daniel, Fernández, Pol, Garnatje, Teresa, Garcia, Sònia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6790504/
https://www.ncbi.nlm.nih.gov/pubmed/31608375
http://dx.doi.org/10.1093/database/baz098
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author Vitales, Daniel
Fernández, Pol
Garnatje, Teresa
Garcia, Sònia
author_facet Vitales, Daniel
Fernández, Pol
Garnatje, Teresa
Garcia, Sònia
author_sort Vitales, Daniel
collection PubMed
description The Genome Size in Asteraceae Database (GSAD, http://www.asteraceaegenomesize.com) has been recently updated, with data from papers published or in press until July 2018. This constitutes the third release of GSAD, currently containing 4350 data entries for 1496 species, which represent a growth of 22.52% in the number of species with available genome size data compared with the previous release, and a growth of 57.72% in terms of entries. Approximately 6% of Asteraceae species are covered in terms of known genome sizes. The number of source papers included in this release (198) means a 48.87% increase with respect to release 2.0. The significant data increase was exploited to study the genome size evolution in the family from a phylogenetic perspective. Our results suggest that the role of chromosome number in genome size diversity within Asteraceae is basically associated to polyploidy, while dysploidy would only cause minor variation in the DNA amount along the family. Among diploid taxa, we found that the evolution of genome size shows a strong phylogenetic signal. However, this trait does not seem to evolve evenly across the phylogeny, but there could be significant scale and clade-dependent patterns. Our analyses indicate that the phylogenetic signal is stronger at low taxonomic levels, with certain tribes standing out as hotspots of autocorrelation between genome size and phylogeny. Finally, we also observe meaningful associations among nuclear DNA content on Asteraceae species and other phenotypical and ecological traits (i.e. plant habit and invasion ability). Overall, this study emphasizes the need to continue generating and analysing genome size data in order to puzzle out the evolution of this parameter and its many biological correlates.
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spelling pubmed-67905042019-10-21 Progress in the study of genome size evolution in Asteraceae: analysis of the last update Vitales, Daniel Fernández, Pol Garnatje, Teresa Garcia, Sònia Database (Oxford) Database Update The Genome Size in Asteraceae Database (GSAD, http://www.asteraceaegenomesize.com) has been recently updated, with data from papers published or in press until July 2018. This constitutes the third release of GSAD, currently containing 4350 data entries for 1496 species, which represent a growth of 22.52% in the number of species with available genome size data compared with the previous release, and a growth of 57.72% in terms of entries. Approximately 6% of Asteraceae species are covered in terms of known genome sizes. The number of source papers included in this release (198) means a 48.87% increase with respect to release 2.0. The significant data increase was exploited to study the genome size evolution in the family from a phylogenetic perspective. Our results suggest that the role of chromosome number in genome size diversity within Asteraceae is basically associated to polyploidy, while dysploidy would only cause minor variation in the DNA amount along the family. Among diploid taxa, we found that the evolution of genome size shows a strong phylogenetic signal. However, this trait does not seem to evolve evenly across the phylogeny, but there could be significant scale and clade-dependent patterns. Our analyses indicate that the phylogenetic signal is stronger at low taxonomic levels, with certain tribes standing out as hotspots of autocorrelation between genome size and phylogeny. Finally, we also observe meaningful associations among nuclear DNA content on Asteraceae species and other phenotypical and ecological traits (i.e. plant habit and invasion ability). Overall, this study emphasizes the need to continue generating and analysing genome size data in order to puzzle out the evolution of this parameter and its many biological correlates. Oxford University Press 2019-10-14 /pmc/articles/PMC6790504/ /pubmed/31608375 http://dx.doi.org/10.1093/database/baz098 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Update
Vitales, Daniel
Fernández, Pol
Garnatje, Teresa
Garcia, Sònia
Progress in the study of genome size evolution in Asteraceae: analysis of the last update
title Progress in the study of genome size evolution in Asteraceae: analysis of the last update
title_full Progress in the study of genome size evolution in Asteraceae: analysis of the last update
title_fullStr Progress in the study of genome size evolution in Asteraceae: analysis of the last update
title_full_unstemmed Progress in the study of genome size evolution in Asteraceae: analysis of the last update
title_short Progress in the study of genome size evolution in Asteraceae: analysis of the last update
title_sort progress in the study of genome size evolution in asteraceae: analysis of the last update
topic Database Update
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6790504/
https://www.ncbi.nlm.nih.gov/pubmed/31608375
http://dx.doi.org/10.1093/database/baz098
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