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Force‐field parametrization based on radial and energy distribution functions

We propose a novel force‐field‐parametrization procedure that fits the parameters of potential functions in a manner that the pair distribution function (DF) of molecules derived from candidate parameters can reproduce the given target DF. Conventionally, approaches to minimize the difference betwee...

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Detalles Bibliográficos
Autores principales: Chiba, Shuntaro, Okuno, Yasushi, Honma, Teruki, Ikeguchi, Mitsunori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6790663/
https://www.ncbi.nlm.nih.gov/pubmed/31343749
http://dx.doi.org/10.1002/jcc.26035
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author Chiba, Shuntaro
Okuno, Yasushi
Honma, Teruki
Ikeguchi, Mitsunori
author_facet Chiba, Shuntaro
Okuno, Yasushi
Honma, Teruki
Ikeguchi, Mitsunori
author_sort Chiba, Shuntaro
collection PubMed
description We propose a novel force‐field‐parametrization procedure that fits the parameters of potential functions in a manner that the pair distribution function (DF) of molecules derived from candidate parameters can reproduce the given target DF. Conventionally, approaches to minimize the difference between the candidate and target DFs employ radial DFs (RDF). RDF itself has been reported to be insufficient for uniquely identifying the parameters of a molecule. To overcome the weakness, we introduce energy DF (EDF) as a target DF, which describes the distribution of the pairwise energy of molecules. We found that the EDF responds more sensitively to a small perturbation in the pairwise potential parameters and provides better fitting accuracy compared to that of RDF. These findings provide valuable insights into a wide range of coarse graining methods, which determine parameters using information obtained from a higher‐level calculation than that of the developed force field. © 2019 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc.
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spelling pubmed-67906632019-10-18 Force‐field parametrization based on radial and energy distribution functions Chiba, Shuntaro Okuno, Yasushi Honma, Teruki Ikeguchi, Mitsunori J Comput Chem Full Papers We propose a novel force‐field‐parametrization procedure that fits the parameters of potential functions in a manner that the pair distribution function (DF) of molecules derived from candidate parameters can reproduce the given target DF. Conventionally, approaches to minimize the difference between the candidate and target DFs employ radial DFs (RDF). RDF itself has been reported to be insufficient for uniquely identifying the parameters of a molecule. To overcome the weakness, we introduce energy DF (EDF) as a target DF, which describes the distribution of the pairwise energy of molecules. We found that the EDF responds more sensitively to a small perturbation in the pairwise potential parameters and provides better fitting accuracy compared to that of RDF. These findings provide valuable insights into a wide range of coarse graining methods, which determine parameters using information obtained from a higher‐level calculation than that of the developed force field. © 2019 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. John Wiley & Sons, Inc. 2019-07-25 2019-11-05 /pmc/articles/PMC6790663/ /pubmed/31343749 http://dx.doi.org/10.1002/jcc.26035 Text en © 2019 The Authors. Journal of Computational Chemistry published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Chiba, Shuntaro
Okuno, Yasushi
Honma, Teruki
Ikeguchi, Mitsunori
Force‐field parametrization based on radial and energy distribution functions
title Force‐field parametrization based on radial and energy distribution functions
title_full Force‐field parametrization based on radial and energy distribution functions
title_fullStr Force‐field parametrization based on radial and energy distribution functions
title_full_unstemmed Force‐field parametrization based on radial and energy distribution functions
title_short Force‐field parametrization based on radial and energy distribution functions
title_sort force‐field parametrization based on radial and energy distribution functions
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6790663/
https://www.ncbi.nlm.nih.gov/pubmed/31343749
http://dx.doi.org/10.1002/jcc.26035
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AT ikeguchimitsunori forcefieldparametrizationbasedonradialandenergydistributionfunctions