FoldX 5.0: working with RNA, small molecules and a new graphical interface

SUMMARY: A new version of FoldX, whose main new features allows running classic FoldX commands on structures containing RNA molecules and includes a module that allows parametrization of ligands or small molecules (ParamX) that were not previously recognized in old versions, has been released. An ex...

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Detalles Bibliográficos
Autores principales: Delgado, Javier, Radusky, Leandro G, Cianferoni, Damiano, Serrano, Luis
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6792092/
https://www.ncbi.nlm.nih.gov/pubmed/30874800
http://dx.doi.org/10.1093/bioinformatics/btz184
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author Delgado, Javier
Radusky, Leandro G
Cianferoni, Damiano
Serrano, Luis
author_facet Delgado, Javier
Radusky, Leandro G
Cianferoni, Damiano
Serrano, Luis
author_sort Delgado, Javier
collection PubMed
description SUMMARY: A new version of FoldX, whose main new features allows running classic FoldX commands on structures containing RNA molecules and includes a module that allows parametrization of ligands or small molecules (ParamX) that were not previously recognized in old versions, has been released. An extended FoldX graphical user interface has also being developed (available as a python plugin for the YASARA molecular viewer) allowing user-friendly parametrization of new custom user molecules encoded using JSON format. AVAILABILITY AND IMPLEMENTATION: http://foldxsuite.crg.eu/
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spelling pubmed-67920922019-10-18 FoldX 5.0: working with RNA, small molecules and a new graphical interface Delgado, Javier Radusky, Leandro G Cianferoni, Damiano Serrano, Luis Bioinformatics Applications Notes SUMMARY: A new version of FoldX, whose main new features allows running classic FoldX commands on structures containing RNA molecules and includes a module that allows parametrization of ligands or small molecules (ParamX) that were not previously recognized in old versions, has been released. An extended FoldX graphical user interface has also being developed (available as a python plugin for the YASARA molecular viewer) allowing user-friendly parametrization of new custom user molecules encoded using JSON format. AVAILABILITY AND IMPLEMENTATION: http://foldxsuite.crg.eu/ Oxford University Press 2019-10-15 2019-03-15 /pmc/articles/PMC6792092/ /pubmed/30874800 http://dx.doi.org/10.1093/bioinformatics/btz184 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Applications Notes
Delgado, Javier
Radusky, Leandro G
Cianferoni, Damiano
Serrano, Luis
FoldX 5.0: working with RNA, small molecules and a new graphical interface
title FoldX 5.0: working with RNA, small molecules and a new graphical interface
title_full FoldX 5.0: working with RNA, small molecules and a new graphical interface
title_fullStr FoldX 5.0: working with RNA, small molecules and a new graphical interface
title_full_unstemmed FoldX 5.0: working with RNA, small molecules and a new graphical interface
title_short FoldX 5.0: working with RNA, small molecules and a new graphical interface
title_sort foldx 5.0: working with rna, small molecules and a new graphical interface
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6792092/
https://www.ncbi.nlm.nih.gov/pubmed/30874800
http://dx.doi.org/10.1093/bioinformatics/btz184
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