Cargando…

The effects of a globin blocker on the resolution of 3’mRNA sequencing data in porcine blood

BACKGROUND: Gene expression profiling in blood is a potential source of biomarkers to evaluate or predict phenotypic differences between pigs but is expensive and inefficient because of the high abundance of globin mRNA in porcine blood. These limitations can be overcome by the use of QuantSeq 3’mRN...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lim, Kyu-Sang, Dong, Qian, Moll, Pamela, Vitkovska, Jana, Wiktorin, Gregor, Bannister, Stephanie, Daujotyte, Dalia, Tuggle, Christopher K., Lunney, Joan K., Plastow, Graham S., Dekkers, Jack C. M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2019
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6794815/ https://www.ncbi.nlm.nih.gov/pubmed/31615396 http://dx.doi.org/10.1186/s12864-019-6122-2

Ejemplares similares

Increasing gene discovery and coverage using RNA-seq of globin RNA reduced porcine blood samples
por: Choi, Igseo, et al.
Publicado: (2014)

Genomic prediction of piglet response to infection with one of two porcine reproductive and respiratory syndrome virus isolates
por: Waide, Emily H., et al.
Publicado: (2018)

Associations of natural variation in the CD163 and other candidate genes on host response of nursery pigs to porcine reproductive and respiratory syndrome virus infection
por: Dong, Qian, et al.
Publicado: (2021)

Comparison of host genetic factors influencing pig response to infection with two North American isolates of porcine reproductive and respiratory syndrome virus
por: Hess, Andrew S., et al.
Publicado: (2016)

Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus
por: Dong, Qian, et al.
Publicado: (2021)

Birth Weight, Intrauterine Growth Retardation and Fetal Susceptibility to Porcine Reproductive and Respiratory Syndrome Virus
por: Ladinig, Andrea, et al.
Publicado: (2014)

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection
por: Kommadath, Arun, et al.
Publicado: (2017)

Control of porcine reproductive and respiratory syndrome (PRRS) through genetic improvements in disease resistance and tolerance
por: Rowland, Raymond R. R., et al.
Publicado: (2012)

Cytokine profiles in pregnant gilts experimentally infected with porcine reproductive and respiratory syndrome virus and relationships with viral load and fetal outcome
por: Ladinig, Andrea, et al.
Publicado: (2014)

Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL
por: Schroyen, Martine, et al.
Publicado: (2016)

Analysis of Porcine Transcriptional Response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the Mesenteric Lymph Node
por: Wang, Yanfang, et al.
Publicado: (2008)

Correlation between Plasma Interleukin-3, the α/β Globin Ratio, and Globin mRNA Stability
por: Rouhi Dehnabeh, S., et al.
Publicado: (2014)

Genome-wide analysis of the transcriptional response to porcine reproductive and respiratory syndrome virus infection at the maternal/fetal interface and in the fetus
por: Wilkinson, Jamie M., et al.
Publicado: (2016)

Maternal and fetal predictors of fetal viral load and death in third trimester, type 2 porcine reproductive and respiratory syndrome virus infected pregnant gilts
por: Ladinig, Andrea, et al.
Publicado: (2015)

Variation in Fetal Outcome, Viral Load and ORF5 Sequence Mutations in a Large Scale Study of Phenotypic Responses to Late Gestation Exposure to Type 2 Porcine Reproductive and Respiratory Syndrome Virus
por: Ladinig, Andrea, et al.
Publicado: (2014)

Genome-wide association and genomic prediction for host response to porcine reproductive and respiratory syndrome virus infection
por: Boddicker, Nicholas J, et al.
Publicado: (2014)

Structural determinants of human ζ-globin mRNA stability
por: He, Zhenning, et al.
Publicado: (2014)

Globin mRNA reduction for whole-blood transcriptome sequencing
por: Krjutškov, Kaarel, et al.
Publicado: (2016)

Differences in Whole Blood Gene Expression Associated with Infection Time-Course and Extent of Fetal Mortality in a Reproductive Model of Type 2 Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) Infection
por: Wilkinson, Jamie M., et al.
Publicado: (2016)

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection
por: Schroyen, Martine, et al.
Publicado: (2015)

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding
por: Kommadath, Arun, et al.
Publicado: (2014)

Genome wide association study of thyroid hormone levels following challenge with porcine reproductive and respiratory syndrome virus
por: Van Goor, Angelica, et al.
Publicado: (2023)

Search for antisense copies of beta-globin mRNA in anemic mouse spleen
por: Gudima, Severin O, et al.
Publicado: (2001)

Induction of erythroid differentiation and increased globin mRNA production with furocoumarins and their photoproducts
por: Salvador, Alessia, et al.
Publicado: (2013)

TRANSPORT OF GLOBIN BY THE RENAL GLOMERULUS
por: Menefee, Max G., et al.
Publicado: (1964)

Chemical mapping of cytosines enzymatically flipped out of the DNA helix
por: Daujotytė, Dalia, et al.
Publicado: (2008)

Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing
por: Herrera-Uribe, Juber, et al.
Publicado: (2021)

Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression
por: Arceo, Maria E., et al.
Publicado: (2013)

The globin gene family of the cephalochordate amphioxus: implications for chordate globin evolution
por: Ebner, Bettina, et al.
Publicado: (2010)

TMEM8 – a non-globin gene entrapped in the globin web
por: Philonenko, Elena S., et al.
Publicado: (2009)

Globin genes on the move
por: Hardison, Ross C
Publicado: (2008)

PROTEIN COAGULATION AND ITS REVERSAL : THE PREPARATION OF INSOLUBLE GLOBIN, SOLUBLE GLOBIN AND HEME
por: Anson, M. L., et al.
Publicado: (1930)

The Full Globin Repertoire of Turtles Provides Insights into Vertebrate Globin Evolution and Functions
por: Schwarze, Kim, et al.
Publicado: (2015)

The phenomena of balanced effect between α-globin gene and of β-globin gene
por: Zhong, Liangying, et al.
Publicado: (2018)

Porcine reproductive and respiratory syndrome virus: An update on an emerging and re-emerging viral disease of swine
por: Lunney, Joan K., et al.
Publicado: (2010)

Genomic organization and gene expression of the multiple globins in Atlantic cod: conservation of globin-flanking genes in chordates infers the origin of the vertebrate globin clusters
por: Wetten, Ola F, et al.
Publicado: (2010)

Splicing promotes the nuclear export of β-globin mRNA by overcoming nuclear retention elements
por: Akef, Abdalla, et al.
Publicado: (2015)

A phylogenomic profile of globins
por: Vinogradov, Serge N, et al.
Publicado: (2006)

THE REACTIONS OF CYANIDE WITH GLOBIN HEMOCHROMOGEN
por: Anson, M. L., et al.
Publicado: (1930)

THE ANTIGENIC PROPERTIES OF GLOBIN CASEINATE
por: Gay, Frederick P., et al.
Publicado: (1913)

Cannot write session to /tmp/vufind_sessions/sess_s7ra71pbcb79h9n62ah1445pst