Cargando…
Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials
Natural sulfide rich deposits are common in coastal areas worldwide, including along the Baltic Sea coast. When artificial drainage exposes these deposits to atmospheric oxygen, iron sulfide minerals in the soils are rapidly oxidized. This process turns the potential acid sulfate soils into actual a...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6795848/ https://www.ncbi.nlm.nih.gov/pubmed/31619684 http://dx.doi.org/10.1038/s41597-019-0222-3 |
_version_ | 1783459517381476352 |
---|---|
author | Högfors-Rönnholm, Eva Lopez-Fernandez, Margarita Christel, Stephan Brambilla, Diego Huntemann, Marcel Clum, Alicia Foster, Brian Foster, Bryce Roux, Simon Palaniappan, Krishnaveni Varghese, Neha Mukherjee, Supratim Reddy, T. B. K. Daum, Chris Copeland, Alex Chen, I-Min A. Ivanova, Natalia N. Kyrpides, Nikos C. Harmon-Smith, Miranda Eloe-Fadrosh, Emiley A. Lundin, Daniel Engblom, Sten Dopson, Mark |
author_facet | Högfors-Rönnholm, Eva Lopez-Fernandez, Margarita Christel, Stephan Brambilla, Diego Huntemann, Marcel Clum, Alicia Foster, Brian Foster, Bryce Roux, Simon Palaniappan, Krishnaveni Varghese, Neha Mukherjee, Supratim Reddy, T. B. K. Daum, Chris Copeland, Alex Chen, I-Min A. Ivanova, Natalia N. Kyrpides, Nikos C. Harmon-Smith, Miranda Eloe-Fadrosh, Emiley A. Lundin, Daniel Engblom, Sten Dopson, Mark |
author_sort | Högfors-Rönnholm, Eva |
collection | PubMed |
description | Natural sulfide rich deposits are common in coastal areas worldwide, including along the Baltic Sea coast. When artificial drainage exposes these deposits to atmospheric oxygen, iron sulfide minerals in the soils are rapidly oxidized. This process turns the potential acid sulfate soils into actual acid sulfate soils and mobilizes large quantities of acidity and leachable toxic metals that cause severe environmental problems. It is known that acidophilic microorganisms living in acid sulfate soils catalyze iron sulfide mineral oxidation. However, only a few studies regarding these communities have been published. In this study, we sampled the oxidized actual acid sulfate soil, the transition zone where oxidation is actively taking place, and the deepest un-oxidized potential acid sulfate soil. Nucleic acids were extracted and 16S rRNA gene amplicons, metagenomes, and metatranscriptomes generated to gain a detailed insight into the communities and their activities. The project will be of great use to microbiologists, environmental biologists, geochemists, and geologists as there is hydrological and geochemical monitoring from the site stretching back for many years. |
format | Online Article Text |
id | pubmed-6795848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67958482019-10-18 Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials Högfors-Rönnholm, Eva Lopez-Fernandez, Margarita Christel, Stephan Brambilla, Diego Huntemann, Marcel Clum, Alicia Foster, Brian Foster, Bryce Roux, Simon Palaniappan, Krishnaveni Varghese, Neha Mukherjee, Supratim Reddy, T. B. K. Daum, Chris Copeland, Alex Chen, I-Min A. Ivanova, Natalia N. Kyrpides, Nikos C. Harmon-Smith, Miranda Eloe-Fadrosh, Emiley A. Lundin, Daniel Engblom, Sten Dopson, Mark Sci Data Data Descriptor Natural sulfide rich deposits are common in coastal areas worldwide, including along the Baltic Sea coast. When artificial drainage exposes these deposits to atmospheric oxygen, iron sulfide minerals in the soils are rapidly oxidized. This process turns the potential acid sulfate soils into actual acid sulfate soils and mobilizes large quantities of acidity and leachable toxic metals that cause severe environmental problems. It is known that acidophilic microorganisms living in acid sulfate soils catalyze iron sulfide mineral oxidation. However, only a few studies regarding these communities have been published. In this study, we sampled the oxidized actual acid sulfate soil, the transition zone where oxidation is actively taking place, and the deepest un-oxidized potential acid sulfate soil. Nucleic acids were extracted and 16S rRNA gene amplicons, metagenomes, and metatranscriptomes generated to gain a detailed insight into the communities and their activities. The project will be of great use to microbiologists, environmental biologists, geochemists, and geologists as there is hydrological and geochemical monitoring from the site stretching back for many years. Nature Publishing Group UK 2019-10-16 /pmc/articles/PMC6795848/ /pubmed/31619684 http://dx.doi.org/10.1038/s41597-019-0222-3 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Högfors-Rönnholm, Eva Lopez-Fernandez, Margarita Christel, Stephan Brambilla, Diego Huntemann, Marcel Clum, Alicia Foster, Brian Foster, Bryce Roux, Simon Palaniappan, Krishnaveni Varghese, Neha Mukherjee, Supratim Reddy, T. B. K. Daum, Chris Copeland, Alex Chen, I-Min A. Ivanova, Natalia N. Kyrpides, Nikos C. Harmon-Smith, Miranda Eloe-Fadrosh, Emiley A. Lundin, Daniel Engblom, Sten Dopson, Mark Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
title | Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
title_full | Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
title_fullStr | Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
title_full_unstemmed | Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
title_short | Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
title_sort | metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6795848/ https://www.ncbi.nlm.nih.gov/pubmed/31619684 http://dx.doi.org/10.1038/s41597-019-0222-3 |
work_keys_str_mv | AT hogforsronnholmeva metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT lopezfernandezmargarita metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT christelstephan metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT brambilladiego metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT huntemannmarcel metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT clumalicia metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT fosterbrian metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT fosterbryce metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT rouxsimon metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT palaniappankrishnaveni metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT vargheseneha metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT mukherjeesupratim metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT reddytbk metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT daumchris metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT copelandalex metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT chenimina metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT ivanovanatalian metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT kyrpidesnikosc metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT harmonsmithmiranda metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT eloefadroshemileya metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT lundindaniel metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT engblomsten metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials AT dopsonmark metagenomesandmetatranscriptomesfromborealpotentialandactualacidsulfatesoilmaterials |