Cargando…

iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features

As an essential post-transcriptional modification, N(7)-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immuno...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Wei, Feng, Pengmian, Song, Xiaoming, Lv, Hao, Lin, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society of Gene & Cell Therapy 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6796804/
https://www.ncbi.nlm.nih.gov/pubmed/31581051
http://dx.doi.org/10.1016/j.omtn.2019.08.022
_version_ 1783459693616693248
author Chen, Wei
Feng, Pengmian
Song, Xiaoming
Lv, Hao
Lin, Hao
author_facet Chen, Wei
Feng, Pengmian
Song, Xiaoming
Lv, Hao
Lin, Hao
author_sort Chen, Wei
collection PubMed
description As an essential post-transcriptional modification, N(7)-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immunoprecipitation sequencing (MeRIP-seq) method has been proposed in this regard, it is still cost-ineffective for detecting the m7G site. Therefore, it is urgent to develop new methods to identify the m7G site. In this work, we developed the first computational predictor called iRNA-m7G to identify m7G sites in the human transcriptome. The feature fusion strategy was used to integrate both sequence- and structure-based features. In the jackknife test, iRNA-m7G obtained an accuracy of 89.88%. The superiority of iRNA-m7G for identifying m7G sites was also demonstrated by comparing with other methods. We hope that iRNA-m7G can become a useful tool to identify m7G sites. A user-friendly web server for iRNA-m7G is freely accessible at http://lin-group.cn/server/iRNA-m7G/.
format Online
Article
Text
id pubmed-6796804
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher American Society of Gene & Cell Therapy
record_format MEDLINE/PubMed
spelling pubmed-67968042019-10-22 iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features Chen, Wei Feng, Pengmian Song, Xiaoming Lv, Hao Lin, Hao Mol Ther Nucleic Acids Article As an essential post-transcriptional modification, N(7)-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immunoprecipitation sequencing (MeRIP-seq) method has been proposed in this regard, it is still cost-ineffective for detecting the m7G site. Therefore, it is urgent to develop new methods to identify the m7G site. In this work, we developed the first computational predictor called iRNA-m7G to identify m7G sites in the human transcriptome. The feature fusion strategy was used to integrate both sequence- and structure-based features. In the jackknife test, iRNA-m7G obtained an accuracy of 89.88%. The superiority of iRNA-m7G for identifying m7G sites was also demonstrated by comparing with other methods. We hope that iRNA-m7G can become a useful tool to identify m7G sites. A user-friendly web server for iRNA-m7G is freely accessible at http://lin-group.cn/server/iRNA-m7G/. American Society of Gene & Cell Therapy 2019-08-28 /pmc/articles/PMC6796804/ /pubmed/31581051 http://dx.doi.org/10.1016/j.omtn.2019.08.022 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Chen, Wei
Feng, Pengmian
Song, Xiaoming
Lv, Hao
Lin, Hao
iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
title iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
title_full iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
title_fullStr iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
title_full_unstemmed iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
title_short iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
title_sort irna-m7g: identifying n(7)-methylguanosine sites by fusing multiple features
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6796804/
https://www.ncbi.nlm.nih.gov/pubmed/31581051
http://dx.doi.org/10.1016/j.omtn.2019.08.022
work_keys_str_mv AT chenwei irnam7gidentifyingn7methylguanosinesitesbyfusingmultiplefeatures
AT fengpengmian irnam7gidentifyingn7methylguanosinesitesbyfusingmultiplefeatures
AT songxiaoming irnam7gidentifyingn7methylguanosinesitesbyfusingmultiplefeatures
AT lvhao irnam7gidentifyingn7methylguanosinesitesbyfusingmultiplefeatures
AT linhao irnam7gidentifyingn7methylguanosinesitesbyfusingmultiplefeatures