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iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features
As an essential post-transcriptional modification, N(7)-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immuno...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society of Gene & Cell Therapy
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6796804/ https://www.ncbi.nlm.nih.gov/pubmed/31581051 http://dx.doi.org/10.1016/j.omtn.2019.08.022 |
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author | Chen, Wei Feng, Pengmian Song, Xiaoming Lv, Hao Lin, Hao |
author_facet | Chen, Wei Feng, Pengmian Song, Xiaoming Lv, Hao Lin, Hao |
author_sort | Chen, Wei |
collection | PubMed |
description | As an essential post-transcriptional modification, N(7)-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immunoprecipitation sequencing (MeRIP-seq) method has been proposed in this regard, it is still cost-ineffective for detecting the m7G site. Therefore, it is urgent to develop new methods to identify the m7G site. In this work, we developed the first computational predictor called iRNA-m7G to identify m7G sites in the human transcriptome. The feature fusion strategy was used to integrate both sequence- and structure-based features. In the jackknife test, iRNA-m7G obtained an accuracy of 89.88%. The superiority of iRNA-m7G for identifying m7G sites was also demonstrated by comparing with other methods. We hope that iRNA-m7G can become a useful tool to identify m7G sites. A user-friendly web server for iRNA-m7G is freely accessible at http://lin-group.cn/server/iRNA-m7G/. |
format | Online Article Text |
id | pubmed-6796804 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | American Society of Gene & Cell Therapy |
record_format | MEDLINE/PubMed |
spelling | pubmed-67968042019-10-22 iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features Chen, Wei Feng, Pengmian Song, Xiaoming Lv, Hao Lin, Hao Mol Ther Nucleic Acids Article As an essential post-transcriptional modification, N(7)-methylguanosine (m7G) regulates nearly every step of the life cycle of mRNA. Accurate identification of the m7G site in the transcriptome will provide insights into its biological functions and mechanisms. Although the m7G-methylated RNA immunoprecipitation sequencing (MeRIP-seq) method has been proposed in this regard, it is still cost-ineffective for detecting the m7G site. Therefore, it is urgent to develop new methods to identify the m7G site. In this work, we developed the first computational predictor called iRNA-m7G to identify m7G sites in the human transcriptome. The feature fusion strategy was used to integrate both sequence- and structure-based features. In the jackknife test, iRNA-m7G obtained an accuracy of 89.88%. The superiority of iRNA-m7G for identifying m7G sites was also demonstrated by comparing with other methods. We hope that iRNA-m7G can become a useful tool to identify m7G sites. A user-friendly web server for iRNA-m7G is freely accessible at http://lin-group.cn/server/iRNA-m7G/. American Society of Gene & Cell Therapy 2019-08-28 /pmc/articles/PMC6796804/ /pubmed/31581051 http://dx.doi.org/10.1016/j.omtn.2019.08.022 Text en © 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Chen, Wei Feng, Pengmian Song, Xiaoming Lv, Hao Lin, Hao iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features |
title | iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features |
title_full | iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features |
title_fullStr | iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features |
title_full_unstemmed | iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features |
title_short | iRNA-m7G: Identifying N(7)-methylguanosine Sites by Fusing Multiple Features |
title_sort | irna-m7g: identifying n(7)-methylguanosine sites by fusing multiple features |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6796804/ https://www.ncbi.nlm.nih.gov/pubmed/31581051 http://dx.doi.org/10.1016/j.omtn.2019.08.022 |
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