16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island

Little is known about the impact of oyster farming on sediment microbial communities. Here, we use 16S rRNA gene sequencing to identify bacterial communities in 24 sediment samples collected from an oyster farm in Ninigret Pond, RI. A total of 13,147 unique operational taxonomic units (OTUs) were as...

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Autores principales: Stevens, Joshua T. E., Fulweiler, Robinson W., Roy Chowdhury, Priyanka
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2019
Materias:
Amplicon Sequence Collections
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797539/
https://www.ncbi.nlm.nih.gov/pubmed/31624174
http://dx.doi.org/10.1128/MRA.01074-19
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author Stevens, Joshua T. E.
Fulweiler, Robinson W.
Roy Chowdhury, Priyanka
author_facet Stevens, Joshua T. E.
Fulweiler, Robinson W.
Roy Chowdhury, Priyanka
author_sort Stevens, Joshua T. E.
collection PubMed
description Little is known about the impact of oyster farming on sediment microbial communities. Here, we use 16S rRNA gene sequencing to identify bacterial communities in 24 sediment samples collected from an oyster farm in Ninigret Pond, RI. A total of 13,147 unique operational taxonomic units (OTUs) were assigned, with Proteobacteria being the dominant phyla across all samples.
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spelling pubmed-67975392019-10-21 16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island Stevens, Joshua T. E. Fulweiler, Robinson W. Roy Chowdhury, Priyanka Microbiol Resour Announc Amplicon Sequence Collections Little is known about the impact of oyster farming on sediment microbial communities. Here, we use 16S rRNA gene sequencing to identify bacterial communities in 24 sediment samples collected from an oyster farm in Ninigret Pond, RI. A total of 13,147 unique operational taxonomic units (OTUs) were assigned, with Proteobacteria being the dominant phyla across all samples. American Society for Microbiology 2019-10-17 /pmc/articles/PMC6797539/ /pubmed/31624174 http://dx.doi.org/10.1128/MRA.01074-19 Text en Copyright © 2019 Stevens et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Amplicon Sequence Collections
Stevens, Joshua T. E.
Fulweiler, Robinson W.
Roy Chowdhury, Priyanka
16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island
title 16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island
title_full 16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island
title_fullStr 16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island
title_full_unstemmed 16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island
title_short 16S rRNA Amplicon Sequencing of Sediment Bacterial Communities in an Oyster Farm in Rhode Island
title_sort 16s rrna amplicon sequencing of sediment bacterial communities in an oyster farm in rhode island
topic Amplicon Sequence Collections
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797539/
https://www.ncbi.nlm.nih.gov/pubmed/31624174
http://dx.doi.org/10.1128/MRA.01074-19
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