Cargando…

Brainglance: Visualizing Group Level MRI Data at One Glance

The vast majority of studies using functional magnetic resonance imaging (fMRI) are analyzed on the group level. Standard group-level analyses, however, come with severe drawbacks: First, they assume functional homogeneity within the group, building on the idea that we use our brains in similar ways...

Descripción completa

Detalles Bibliográficos
Autores principales: Stelzer, Johannes, Lacosse, Eric, Bause, Jonas, Scheffler, Klaus, Lohmann, Gabriele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797611/
https://www.ncbi.nlm.nih.gov/pubmed/31680793
http://dx.doi.org/10.3389/fnins.2019.00972
_version_ 1783459867173847040
author Stelzer, Johannes
Lacosse, Eric
Bause, Jonas
Scheffler, Klaus
Lohmann, Gabriele
author_facet Stelzer, Johannes
Lacosse, Eric
Bause, Jonas
Scheffler, Klaus
Lohmann, Gabriele
author_sort Stelzer, Johannes
collection PubMed
description The vast majority of studies using functional magnetic resonance imaging (fMRI) are analyzed on the group level. Standard group-level analyses, however, come with severe drawbacks: First, they assume functional homogeneity within the group, building on the idea that we use our brains in similar ways. Second, group-level analyses require spatial warping and substantial smoothing to accommodate for anatomical variability across subjects. Such procedures massively distort the underlying fMRI data, which hampers the spatial specificity. Taken together, group statistics capture the effective overlap, rendering the modeling of individual deviations impossible – a major source of false positivity and negativity. The alternative analysis approach is to leave the data in the native subject space, but this makes comparison across individuals difficult. Here, we propose a new framework for visualizing group-level information, better preserving the information of individual subjects. Our proposal is to limit the use of invasive data procedures such as spatial smoothing and warping and rather extract regional information from the individuals. This information is then visualized for all subjects and brain areas at one glance – hence we term the method brainglance. Additionally, our method incorporates a means for clustering individuals to further identify common traits. We showcase our method on two publicly available data sets and discuss our findings.
format Online
Article
Text
id pubmed-6797611
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-67976112019-11-01 Brainglance: Visualizing Group Level MRI Data at One Glance Stelzer, Johannes Lacosse, Eric Bause, Jonas Scheffler, Klaus Lohmann, Gabriele Front Neurosci Neuroscience The vast majority of studies using functional magnetic resonance imaging (fMRI) are analyzed on the group level. Standard group-level analyses, however, come with severe drawbacks: First, they assume functional homogeneity within the group, building on the idea that we use our brains in similar ways. Second, group-level analyses require spatial warping and substantial smoothing to accommodate for anatomical variability across subjects. Such procedures massively distort the underlying fMRI data, which hampers the spatial specificity. Taken together, group statistics capture the effective overlap, rendering the modeling of individual deviations impossible – a major source of false positivity and negativity. The alternative analysis approach is to leave the data in the native subject space, but this makes comparison across individuals difficult. Here, we propose a new framework for visualizing group-level information, better preserving the information of individual subjects. Our proposal is to limit the use of invasive data procedures such as spatial smoothing and warping and rather extract regional information from the individuals. This information is then visualized for all subjects and brain areas at one glance – hence we term the method brainglance. Additionally, our method incorporates a means for clustering individuals to further identify common traits. We showcase our method on two publicly available data sets and discuss our findings. Frontiers Media S.A. 2019-10-11 /pmc/articles/PMC6797611/ /pubmed/31680793 http://dx.doi.org/10.3389/fnins.2019.00972 Text en Copyright © 2019 Stelzer, Lacosse, Bause, Scheffler and Lohmann. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Stelzer, Johannes
Lacosse, Eric
Bause, Jonas
Scheffler, Klaus
Lohmann, Gabriele
Brainglance: Visualizing Group Level MRI Data at One Glance
title Brainglance: Visualizing Group Level MRI Data at One Glance
title_full Brainglance: Visualizing Group Level MRI Data at One Glance
title_fullStr Brainglance: Visualizing Group Level MRI Data at One Glance
title_full_unstemmed Brainglance: Visualizing Group Level MRI Data at One Glance
title_short Brainglance: Visualizing Group Level MRI Data at One Glance
title_sort brainglance: visualizing group level mri data at one glance
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797611/
https://www.ncbi.nlm.nih.gov/pubmed/31680793
http://dx.doi.org/10.3389/fnins.2019.00972
work_keys_str_mv AT stelzerjohannes brainglancevisualizinggrouplevelmridataatoneglance
AT lacosseeric brainglancevisualizinggrouplevelmridataatoneglance
AT bausejonas brainglancevisualizinggrouplevelmridataatoneglance
AT schefflerklaus brainglancevisualizinggrouplevelmridataatoneglance
AT lohmanngabriele brainglancevisualizinggrouplevelmridataatoneglance