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Brainglance: Visualizing Group Level MRI Data at One Glance
The vast majority of studies using functional magnetic resonance imaging (fMRI) are analyzed on the group level. Standard group-level analyses, however, come with severe drawbacks: First, they assume functional homogeneity within the group, building on the idea that we use our brains in similar ways...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797611/ https://www.ncbi.nlm.nih.gov/pubmed/31680793 http://dx.doi.org/10.3389/fnins.2019.00972 |
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author | Stelzer, Johannes Lacosse, Eric Bause, Jonas Scheffler, Klaus Lohmann, Gabriele |
author_facet | Stelzer, Johannes Lacosse, Eric Bause, Jonas Scheffler, Klaus Lohmann, Gabriele |
author_sort | Stelzer, Johannes |
collection | PubMed |
description | The vast majority of studies using functional magnetic resonance imaging (fMRI) are analyzed on the group level. Standard group-level analyses, however, come with severe drawbacks: First, they assume functional homogeneity within the group, building on the idea that we use our brains in similar ways. Second, group-level analyses require spatial warping and substantial smoothing to accommodate for anatomical variability across subjects. Such procedures massively distort the underlying fMRI data, which hampers the spatial specificity. Taken together, group statistics capture the effective overlap, rendering the modeling of individual deviations impossible – a major source of false positivity and negativity. The alternative analysis approach is to leave the data in the native subject space, but this makes comparison across individuals difficult. Here, we propose a new framework for visualizing group-level information, better preserving the information of individual subjects. Our proposal is to limit the use of invasive data procedures such as spatial smoothing and warping and rather extract regional information from the individuals. This information is then visualized for all subjects and brain areas at one glance – hence we term the method brainglance. Additionally, our method incorporates a means for clustering individuals to further identify common traits. We showcase our method on two publicly available data sets and discuss our findings. |
format | Online Article Text |
id | pubmed-6797611 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67976112019-11-01 Brainglance: Visualizing Group Level MRI Data at One Glance Stelzer, Johannes Lacosse, Eric Bause, Jonas Scheffler, Klaus Lohmann, Gabriele Front Neurosci Neuroscience The vast majority of studies using functional magnetic resonance imaging (fMRI) are analyzed on the group level. Standard group-level analyses, however, come with severe drawbacks: First, they assume functional homogeneity within the group, building on the idea that we use our brains in similar ways. Second, group-level analyses require spatial warping and substantial smoothing to accommodate for anatomical variability across subjects. Such procedures massively distort the underlying fMRI data, which hampers the spatial specificity. Taken together, group statistics capture the effective overlap, rendering the modeling of individual deviations impossible – a major source of false positivity and negativity. The alternative analysis approach is to leave the data in the native subject space, but this makes comparison across individuals difficult. Here, we propose a new framework for visualizing group-level information, better preserving the information of individual subjects. Our proposal is to limit the use of invasive data procedures such as spatial smoothing and warping and rather extract regional information from the individuals. This information is then visualized for all subjects and brain areas at one glance – hence we term the method brainglance. Additionally, our method incorporates a means for clustering individuals to further identify common traits. We showcase our method on two publicly available data sets and discuss our findings. Frontiers Media S.A. 2019-10-11 /pmc/articles/PMC6797611/ /pubmed/31680793 http://dx.doi.org/10.3389/fnins.2019.00972 Text en Copyright © 2019 Stelzer, Lacosse, Bause, Scheffler and Lohmann. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Stelzer, Johannes Lacosse, Eric Bause, Jonas Scheffler, Klaus Lohmann, Gabriele Brainglance: Visualizing Group Level MRI Data at One Glance |
title | Brainglance: Visualizing Group Level MRI Data at One Glance |
title_full | Brainglance: Visualizing Group Level MRI Data at One Glance |
title_fullStr | Brainglance: Visualizing Group Level MRI Data at One Glance |
title_full_unstemmed | Brainglance: Visualizing Group Level MRI Data at One Glance |
title_short | Brainglance: Visualizing Group Level MRI Data at One Glance |
title_sort | brainglance: visualizing group level mri data at one glance |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797611/ https://www.ncbi.nlm.nih.gov/pubmed/31680793 http://dx.doi.org/10.3389/fnins.2019.00972 |
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