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RegularizedSCA: Regularized simultaneous component analysis of multiblock data in R

This article introduces a package developed for R (R Core Team, 2017) for performing an integrated analysis of multiple data blocks (i.e., linked data) coming from different sources. The methods in this package combine simultaneous component analysis (SCA) with structured selection of variables. The...

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Detalles Bibliográficos
Autores principales: Gu, Zhengguo, Van Deun, Katrijn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797642/
https://www.ncbi.nlm.nih.gov/pubmed/30542912
http://dx.doi.org/10.3758/s13428-018-1163-z
Descripción
Sumario:This article introduces a package developed for R (R Core Team, 2017) for performing an integrated analysis of multiple data blocks (i.e., linked data) coming from different sources. The methods in this package combine simultaneous component analysis (SCA) with structured selection of variables. The key feature of this package is that it allows to (1) identify joint variation that is shared across all the data sources and specific variation that is associated with one or a few of the data sources and (2) flexibly estimate component matrices with predefined structures. Linked data occur in many disciplines (e.g., biomedical research, bioinformatics, chemometrics, finance, genomics, psychology, and sociology) and especially in multidisciplinary research. Hence, we expect our package to be useful in various fields.