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A unified framework for analysis of individual-based models in ecology and beyond
Individual-based models, ‘IBMs’, describe naturally the dynamics of interacting organisms or social or financial agents. They are considered too complex for mathematical analysis, but computer simulations of them cannot give the general insights required. Here, we resolve this problem with a general...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797757/ https://www.ncbi.nlm.nih.gov/pubmed/31624268 http://dx.doi.org/10.1038/s41467-019-12172-y |
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author | Cornell, Stephen J. Suprunenko, Yevhen F. Finkelshtein, Dmitri Somervuo, Panu Ovaskainen, Otso |
author_facet | Cornell, Stephen J. Suprunenko, Yevhen F. Finkelshtein, Dmitri Somervuo, Panu Ovaskainen, Otso |
author_sort | Cornell, Stephen J. |
collection | PubMed |
description | Individual-based models, ‘IBMs’, describe naturally the dynamics of interacting organisms or social or financial agents. They are considered too complex for mathematical analysis, but computer simulations of them cannot give the general insights required. Here, we resolve this problem with a general mathematical framework for IBMs containing interactions of an unlimited level of complexity, and derive equations that reliably approximate the effects of space and stochasticity. We provide software, specified in an accessible and intuitive graphical way, so any researcher can obtain analytical and simulation results for any particular IBM without algebraic manipulation. We illustrate the framework with examples from movement ecology, conservation biology, and evolutionary ecology. This framework will provide unprecedented insights into a hitherto intractable panoply of complex models across many scientific fields. |
format | Online Article Text |
id | pubmed-6797757 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-67977572019-10-21 A unified framework for analysis of individual-based models in ecology and beyond Cornell, Stephen J. Suprunenko, Yevhen F. Finkelshtein, Dmitri Somervuo, Panu Ovaskainen, Otso Nat Commun Article Individual-based models, ‘IBMs’, describe naturally the dynamics of interacting organisms or social or financial agents. They are considered too complex for mathematical analysis, but computer simulations of them cannot give the general insights required. Here, we resolve this problem with a general mathematical framework for IBMs containing interactions of an unlimited level of complexity, and derive equations that reliably approximate the effects of space and stochasticity. We provide software, specified in an accessible and intuitive graphical way, so any researcher can obtain analytical and simulation results for any particular IBM without algebraic manipulation. We illustrate the framework with examples from movement ecology, conservation biology, and evolutionary ecology. This framework will provide unprecedented insights into a hitherto intractable panoply of complex models across many scientific fields. Nature Publishing Group UK 2019-10-17 /pmc/articles/PMC6797757/ /pubmed/31624268 http://dx.doi.org/10.1038/s41467-019-12172-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Cornell, Stephen J. Suprunenko, Yevhen F. Finkelshtein, Dmitri Somervuo, Panu Ovaskainen, Otso A unified framework for analysis of individual-based models in ecology and beyond |
title | A unified framework for analysis of individual-based models in ecology and beyond |
title_full | A unified framework for analysis of individual-based models in ecology and beyond |
title_fullStr | A unified framework for analysis of individual-based models in ecology and beyond |
title_full_unstemmed | A unified framework for analysis of individual-based models in ecology and beyond |
title_short | A unified framework for analysis of individual-based models in ecology and beyond |
title_sort | unified framework for analysis of individual-based models in ecology and beyond |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797757/ https://www.ncbi.nlm.nih.gov/pubmed/31624268 http://dx.doi.org/10.1038/s41467-019-12172-y |
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