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Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment
Multiscale computational models of the heart are being extensively investigated for improved assessment of drug-induced torsades de pointes (TdP) risk, a fatal side effect of many drugs. Model-derived metrics such as action potential duration and net charge carried by ionic currents (qNet) have been...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797832/ https://www.ncbi.nlm.nih.gov/pubmed/31680938 http://dx.doi.org/10.3389/fphar.2019.01054 |
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author | Parikh, Jaimit Di Achille, Paolo Kozloski, James Gurev, Viatcheslav |
author_facet | Parikh, Jaimit Di Achille, Paolo Kozloski, James Gurev, Viatcheslav |
author_sort | Parikh, Jaimit |
collection | PubMed |
description | Multiscale computational models of the heart are being extensively investigated for improved assessment of drug-induced torsades de pointes (TdP) risk, a fatal side effect of many drugs. Model-derived metrics such as action potential duration and net charge carried by ionic currents (qNet) have been proposed as potential candidates for TdP risk stratification after being tested on small datasets. Unlike purely statistical approaches, model-derived metrics are thought to provide mechanism-based classification. In particular, qNet has been recently proposed as a surrogate metric for early afterdepolarizations (EADs), which are known to be cellular triggers of TdP. Analysis of critical model components and of the ion channels that have major impact on model-derived metrics can lead to improvements in the confidence of the prediction. In this paper, we analyze large populations of virtual drugs to systematically examine the influence of different ion channels on model-derived metrics that have been proposed for proarrhythmic risk assessment. We demonstrate via global sensitivity analysis (GSA) that model-derived metrics are most sensitive to different sets of input parameters. Similarly, important differences in sensitivity to specific channel blocks are highlighted when classifying drugs into different risk categories by either qNet or a metric directly based on simulated EADs. In particular, the higher sensitivity of qNet to the block of the late sodium channel might explain why its classification accuracy is better than that of the EAD-based metric, as shown for a small set of known drugs. Our results highlight the need for a better mechanistic interpretation of promising metrics like qNet based on a formal analysis of models. GSA should, therefore, constitute an essential component of the in silico workflow for proarrhythmic risk assessment, as an improved understanding of the structure of model-derived metrics could increase confidence in model-predicted risk. |
format | Online Article Text |
id | pubmed-6797832 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-67978322019-11-01 Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment Parikh, Jaimit Di Achille, Paolo Kozloski, James Gurev, Viatcheslav Front Pharmacol Pharmacology Multiscale computational models of the heart are being extensively investigated for improved assessment of drug-induced torsades de pointes (TdP) risk, a fatal side effect of many drugs. Model-derived metrics such as action potential duration and net charge carried by ionic currents (qNet) have been proposed as potential candidates for TdP risk stratification after being tested on small datasets. Unlike purely statistical approaches, model-derived metrics are thought to provide mechanism-based classification. In particular, qNet has been recently proposed as a surrogate metric for early afterdepolarizations (EADs), which are known to be cellular triggers of TdP. Analysis of critical model components and of the ion channels that have major impact on model-derived metrics can lead to improvements in the confidence of the prediction. In this paper, we analyze large populations of virtual drugs to systematically examine the influence of different ion channels on model-derived metrics that have been proposed for proarrhythmic risk assessment. We demonstrate via global sensitivity analysis (GSA) that model-derived metrics are most sensitive to different sets of input parameters. Similarly, important differences in sensitivity to specific channel blocks are highlighted when classifying drugs into different risk categories by either qNet or a metric directly based on simulated EADs. In particular, the higher sensitivity of qNet to the block of the late sodium channel might explain why its classification accuracy is better than that of the EAD-based metric, as shown for a small set of known drugs. Our results highlight the need for a better mechanistic interpretation of promising metrics like qNet based on a formal analysis of models. GSA should, therefore, constitute an essential component of the in silico workflow for proarrhythmic risk assessment, as an improved understanding of the structure of model-derived metrics could increase confidence in model-predicted risk. Frontiers Media S.A. 2019-10-02 /pmc/articles/PMC6797832/ /pubmed/31680938 http://dx.doi.org/10.3389/fphar.2019.01054 Text en Copyright © 2019 Parikh, Di Achille, Kozloski and Gurev http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Pharmacology Parikh, Jaimit Di Achille, Paolo Kozloski, James Gurev, Viatcheslav Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment |
title | Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment |
title_full | Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment |
title_fullStr | Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment |
title_full_unstemmed | Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment |
title_short | Global Sensitivity Analysis of Ventricular Myocyte Model-Derived Metrics for Proarrhythmic Risk Assessment |
title_sort | global sensitivity analysis of ventricular myocyte model-derived metrics for proarrhythmic risk assessment |
topic | Pharmacology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6797832/ https://www.ncbi.nlm.nih.gov/pubmed/31680938 http://dx.doi.org/10.3389/fphar.2019.01054 |
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