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The walnut genetic resources of INRA: chronological phenotypic data and ontology

OBJECTIVES: Persian walnut (Juglans regia L.), the walnut species cultivated for nut production, is grown worldwide in temperate areas. In this work, chronological phenotypic data have been collected regarding a part of the walnut genetic resources of the French National Institute for Agricultural R...

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Autores principales: Bernard, Anthony, Barreneche, Teresa, Delmas, Marine, Durand, Sophie, Pommier, Cyril, Lheureux, Fabrice, Tranchand, Eloïse, Naudin, Marianne, Dirlewanger, Elisabeth
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798330/
https://www.ncbi.nlm.nih.gov/pubmed/31623654
http://dx.doi.org/10.1186/s13104-019-4678-1
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author Bernard, Anthony
Barreneche, Teresa
Delmas, Marine
Durand, Sophie
Pommier, Cyril
Lheureux, Fabrice
Tranchand, Eloïse
Naudin, Marianne
Dirlewanger, Elisabeth
author_facet Bernard, Anthony
Barreneche, Teresa
Delmas, Marine
Durand, Sophie
Pommier, Cyril
Lheureux, Fabrice
Tranchand, Eloïse
Naudin, Marianne
Dirlewanger, Elisabeth
author_sort Bernard, Anthony
collection PubMed
description OBJECTIVES: Persian walnut (Juglans regia L.), the walnut species cultivated for nut production, is grown worldwide in temperate areas. In this work, chronological phenotypic data have been collected regarding a part of the walnut genetic resources of the French National Institute for Agricultural Research (INRA) of Bordeaux. Using a well described ontology, these data have been collected in order to assess the phenotypic variations among the accessions, and to better manage the germplasm collection. These data can also be helpful for any breeding program as they provide a clear phenotypic characterization of the main cultivars. DATA DESCRIPTION: This paper introduces a dataset collected for 150 J. regia accessions for a period from 1965 to 2016, and for 3 observation sites, released as comma separated value spreadsheet. It includes observations about phenological traits (e.g. flowering dates), traits related to in-shell walnut (e.g. weight and size), and traits related to kernel (e.g. color). It can be used by other researchers particularly for multi-site phenological studies in the context of climate change since climate data files are also available. In addition, a complete walnut ontology was deposited in this repository and can assist to standardize the management of any walnut germplasm collection.
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spelling pubmed-67983302019-10-21 The walnut genetic resources of INRA: chronological phenotypic data and ontology Bernard, Anthony Barreneche, Teresa Delmas, Marine Durand, Sophie Pommier, Cyril Lheureux, Fabrice Tranchand, Eloïse Naudin, Marianne Dirlewanger, Elisabeth BMC Res Notes Data Note OBJECTIVES: Persian walnut (Juglans regia L.), the walnut species cultivated for nut production, is grown worldwide in temperate areas. In this work, chronological phenotypic data have been collected regarding a part of the walnut genetic resources of the French National Institute for Agricultural Research (INRA) of Bordeaux. Using a well described ontology, these data have been collected in order to assess the phenotypic variations among the accessions, and to better manage the germplasm collection. These data can also be helpful for any breeding program as they provide a clear phenotypic characterization of the main cultivars. DATA DESCRIPTION: This paper introduces a dataset collected for 150 J. regia accessions for a period from 1965 to 2016, and for 3 observation sites, released as comma separated value spreadsheet. It includes observations about phenological traits (e.g. flowering dates), traits related to in-shell walnut (e.g. weight and size), and traits related to kernel (e.g. color). It can be used by other researchers particularly for multi-site phenological studies in the context of climate change since climate data files are also available. In addition, a complete walnut ontology was deposited in this repository and can assist to standardize the management of any walnut germplasm collection. BioMed Central 2019-10-17 /pmc/articles/PMC6798330/ /pubmed/31623654 http://dx.doi.org/10.1186/s13104-019-4678-1 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Data Note
Bernard, Anthony
Barreneche, Teresa
Delmas, Marine
Durand, Sophie
Pommier, Cyril
Lheureux, Fabrice
Tranchand, Eloïse
Naudin, Marianne
Dirlewanger, Elisabeth
The walnut genetic resources of INRA: chronological phenotypic data and ontology
title The walnut genetic resources of INRA: chronological phenotypic data and ontology
title_full The walnut genetic resources of INRA: chronological phenotypic data and ontology
title_fullStr The walnut genetic resources of INRA: chronological phenotypic data and ontology
title_full_unstemmed The walnut genetic resources of INRA: chronological phenotypic data and ontology
title_short The walnut genetic resources of INRA: chronological phenotypic data and ontology
title_sort walnut genetic resources of inra: chronological phenotypic data and ontology
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6798330/
https://www.ncbi.nlm.nih.gov/pubmed/31623654
http://dx.doi.org/10.1186/s13104-019-4678-1
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