Cargando…

Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning

We present a novel method to rapidly assess drug efficacy in targeted cancer therapy, where antineoplastic agents are conjugated to antibodies targeting surface markers on tumor cells. We have fabricated and characterized a device capable of rapidly assessing tumor cell sensitivity to drugs using mu...

Descripción completa

Detalles Bibliográficos
Autores principales: Ahuja, Karan, Rather, Gulam M., Lin, Zhongtian, Sui, Jianye, Xie, Pengfei, Le, Tuan, Bertino, Joseph R., Javanmard, Mehdi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799891/
https://www.ncbi.nlm.nih.gov/pubmed/31645995
http://dx.doi.org/10.1038/s41378-019-0073-2
_version_ 1783460389363646464
author Ahuja, Karan
Rather, Gulam M.
Lin, Zhongtian
Sui, Jianye
Xie, Pengfei
Le, Tuan
Bertino, Joseph R.
Javanmard, Mehdi
author_facet Ahuja, Karan
Rather, Gulam M.
Lin, Zhongtian
Sui, Jianye
Xie, Pengfei
Le, Tuan
Bertino, Joseph R.
Javanmard, Mehdi
author_sort Ahuja, Karan
collection PubMed
description We present a novel method to rapidly assess drug efficacy in targeted cancer therapy, where antineoplastic agents are conjugated to antibodies targeting surface markers on tumor cells. We have fabricated and characterized a device capable of rapidly assessing tumor cell sensitivity to drugs using multifrequency impedance spectroscopy in combination with supervised machine learning for enhanced classification accuracy. Currently commercially available devices for the automated analysis of cell viability are based on staining, which fundamentally limits the subsequent characterization of these cells as well as downstream molecular analysis. Our approach requires as little as 20 μL of volume and avoids staining allowing for further downstream molecular analysis. To the best of our knowledge, this manuscript presents the first comprehensive attempt to using high-dimensional data and supervised machine learning, particularly phase change spectra obtained from multi-frequency impedance cytometry as features for the support vector machine classifier, to assess viability of cells without staining or labelling.
format Online
Article
Text
id pubmed-6799891
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-67998912019-10-23 Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning Ahuja, Karan Rather, Gulam M. Lin, Zhongtian Sui, Jianye Xie, Pengfei Le, Tuan Bertino, Joseph R. Javanmard, Mehdi Microsyst Nanoeng Article We present a novel method to rapidly assess drug efficacy in targeted cancer therapy, where antineoplastic agents are conjugated to antibodies targeting surface markers on tumor cells. We have fabricated and characterized a device capable of rapidly assessing tumor cell sensitivity to drugs using multifrequency impedance spectroscopy in combination with supervised machine learning for enhanced classification accuracy. Currently commercially available devices for the automated analysis of cell viability are based on staining, which fundamentally limits the subsequent characterization of these cells as well as downstream molecular analysis. Our approach requires as little as 20 μL of volume and avoids staining allowing for further downstream molecular analysis. To the best of our knowledge, this manuscript presents the first comprehensive attempt to using high-dimensional data and supervised machine learning, particularly phase change spectra obtained from multi-frequency impedance cytometry as features for the support vector machine classifier, to assess viability of cells without staining or labelling. Nature Publishing Group UK 2019-07-15 /pmc/articles/PMC6799891/ /pubmed/31645995 http://dx.doi.org/10.1038/s41378-019-0073-2 Text en © The Author(s) 2019 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ahuja, Karan
Rather, Gulam M.
Lin, Zhongtian
Sui, Jianye
Xie, Pengfei
Le, Tuan
Bertino, Joseph R.
Javanmard, Mehdi
Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
title Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
title_full Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
title_fullStr Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
title_full_unstemmed Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
title_short Toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
title_sort toward point-of-care assessment of patient response: a portable tool for rapidly assessing cancer drug efficacy using multifrequency impedance cytometry and supervised machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799891/
https://www.ncbi.nlm.nih.gov/pubmed/31645995
http://dx.doi.org/10.1038/s41378-019-0073-2
work_keys_str_mv AT ahujakaran towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT rathergulamm towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT linzhongtian towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT suijianye towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT xiepengfei towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT letuan towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT bertinojosephr towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning
AT javanmardmehdi towardpointofcareassessmentofpatientresponseaportabletoolforrapidlyassessingcancerdrugefficacyusingmultifrequencyimpedancecytometryandsupervisedmachinelearning