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Machine learning prediction of emesis and gastrointestinal state in ferrets
Although electrogastrography (EGG) could be a critical tool in the diagnosis of patients with gastrointestinal (GI) disease, it remains under-utilized. The lack of spatial and temporal resolution using current EGG methods presents a significant roadblock to more widespread usage. Human and preclinic...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799899/ https://www.ncbi.nlm.nih.gov/pubmed/31626659 http://dx.doi.org/10.1371/journal.pone.0223279 |
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author | Nanivadekar, Ameya C. Miller, Derek M. Fulton, Stephanie Wong, Liane Ogren, John Chitnis, Girish McLaughlin, Bryan Zhai, Shuyan Fisher, Lee E. Yates, Bill J. Horn, Charles C. |
author_facet | Nanivadekar, Ameya C. Miller, Derek M. Fulton, Stephanie Wong, Liane Ogren, John Chitnis, Girish McLaughlin, Bryan Zhai, Shuyan Fisher, Lee E. Yates, Bill J. Horn, Charles C. |
author_sort | Nanivadekar, Ameya C. |
collection | PubMed |
description | Although electrogastrography (EGG) could be a critical tool in the diagnosis of patients with gastrointestinal (GI) disease, it remains under-utilized. The lack of spatial and temporal resolution using current EGG methods presents a significant roadblock to more widespread usage. Human and preclinical studies have shown that GI myoelectric electrodes can record signals containing significantly more information than can be derived from abdominal surface electrodes. The current study sought to assess the efficacy of multi-electrode arrays, surgically implanted on the serosal surface of the GI tract, from gastric fundus-to-duodenum, in recording myoelectric signals. It also examines the potential for machine learning algorithms to predict functional states, such as retching and emesis, from GI signal features. Studies were performed using ferrets, a gold standard model for emesis testing. Our results include simultaneous recordings from up to six GI recording sites in both anesthetized and chronically implanted free-moving ferrets. Testing conditions to produce different gastric states included gastric distension, intragastric infusion of emetine (a prototypical emetic agent), and feeding. Despite the observed variability in GI signals, machine learning algorithms, including k-nearest neighbors and support vector machines, were able to detect the state of the stomach with high overall accuracy (>75%). The present study is the first demonstration of machine learning algorithms to detect the physiological state of the stomach and onset of retching, which could provide a methodology to diagnose GI diseases and symptoms such as nausea and vomiting. |
format | Online Article Text |
id | pubmed-6799899 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-67998992019-10-25 Machine learning prediction of emesis and gastrointestinal state in ferrets Nanivadekar, Ameya C. Miller, Derek M. Fulton, Stephanie Wong, Liane Ogren, John Chitnis, Girish McLaughlin, Bryan Zhai, Shuyan Fisher, Lee E. Yates, Bill J. Horn, Charles C. PLoS One Research Article Although electrogastrography (EGG) could be a critical tool in the diagnosis of patients with gastrointestinal (GI) disease, it remains under-utilized. The lack of spatial and temporal resolution using current EGG methods presents a significant roadblock to more widespread usage. Human and preclinical studies have shown that GI myoelectric electrodes can record signals containing significantly more information than can be derived from abdominal surface electrodes. The current study sought to assess the efficacy of multi-electrode arrays, surgically implanted on the serosal surface of the GI tract, from gastric fundus-to-duodenum, in recording myoelectric signals. It also examines the potential for machine learning algorithms to predict functional states, such as retching and emesis, from GI signal features. Studies were performed using ferrets, a gold standard model for emesis testing. Our results include simultaneous recordings from up to six GI recording sites in both anesthetized and chronically implanted free-moving ferrets. Testing conditions to produce different gastric states included gastric distension, intragastric infusion of emetine (a prototypical emetic agent), and feeding. Despite the observed variability in GI signals, machine learning algorithms, including k-nearest neighbors and support vector machines, were able to detect the state of the stomach with high overall accuracy (>75%). The present study is the first demonstration of machine learning algorithms to detect the physiological state of the stomach and onset of retching, which could provide a methodology to diagnose GI diseases and symptoms such as nausea and vomiting. Public Library of Science 2019-10-18 /pmc/articles/PMC6799899/ /pubmed/31626659 http://dx.doi.org/10.1371/journal.pone.0223279 Text en © 2019 Nanivadekar et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Nanivadekar, Ameya C. Miller, Derek M. Fulton, Stephanie Wong, Liane Ogren, John Chitnis, Girish McLaughlin, Bryan Zhai, Shuyan Fisher, Lee E. Yates, Bill J. Horn, Charles C. Machine learning prediction of emesis and gastrointestinal state in ferrets |
title | Machine learning prediction of emesis and gastrointestinal state in ferrets |
title_full | Machine learning prediction of emesis and gastrointestinal state in ferrets |
title_fullStr | Machine learning prediction of emesis and gastrointestinal state in ferrets |
title_full_unstemmed | Machine learning prediction of emesis and gastrointestinal state in ferrets |
title_short | Machine learning prediction of emesis and gastrointestinal state in ferrets |
title_sort | machine learning prediction of emesis and gastrointestinal state in ferrets |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799899/ https://www.ncbi.nlm.nih.gov/pubmed/31626659 http://dx.doi.org/10.1371/journal.pone.0223279 |
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