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Machine learning prediction of emesis and gastrointestinal state in ferrets

Although electrogastrography (EGG) could be a critical tool in the diagnosis of patients with gastrointestinal (GI) disease, it remains under-utilized. The lack of spatial and temporal resolution using current EGG methods presents a significant roadblock to more widespread usage. Human and preclinic...

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Autores principales: Nanivadekar, Ameya C., Miller, Derek M., Fulton, Stephanie, Wong, Liane, Ogren, John, Chitnis, Girish, McLaughlin, Bryan, Zhai, Shuyan, Fisher, Lee E., Yates, Bill J., Horn, Charles C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799899/
https://www.ncbi.nlm.nih.gov/pubmed/31626659
http://dx.doi.org/10.1371/journal.pone.0223279
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author Nanivadekar, Ameya C.
Miller, Derek M.
Fulton, Stephanie
Wong, Liane
Ogren, John
Chitnis, Girish
McLaughlin, Bryan
Zhai, Shuyan
Fisher, Lee E.
Yates, Bill J.
Horn, Charles C.
author_facet Nanivadekar, Ameya C.
Miller, Derek M.
Fulton, Stephanie
Wong, Liane
Ogren, John
Chitnis, Girish
McLaughlin, Bryan
Zhai, Shuyan
Fisher, Lee E.
Yates, Bill J.
Horn, Charles C.
author_sort Nanivadekar, Ameya C.
collection PubMed
description Although electrogastrography (EGG) could be a critical tool in the diagnosis of patients with gastrointestinal (GI) disease, it remains under-utilized. The lack of spatial and temporal resolution using current EGG methods presents a significant roadblock to more widespread usage. Human and preclinical studies have shown that GI myoelectric electrodes can record signals containing significantly more information than can be derived from abdominal surface electrodes. The current study sought to assess the efficacy of multi-electrode arrays, surgically implanted on the serosal surface of the GI tract, from gastric fundus-to-duodenum, in recording myoelectric signals. It also examines the potential for machine learning algorithms to predict functional states, such as retching and emesis, from GI signal features. Studies were performed using ferrets, a gold standard model for emesis testing. Our results include simultaneous recordings from up to six GI recording sites in both anesthetized and chronically implanted free-moving ferrets. Testing conditions to produce different gastric states included gastric distension, intragastric infusion of emetine (a prototypical emetic agent), and feeding. Despite the observed variability in GI signals, machine learning algorithms, including k-nearest neighbors and support vector machines, were able to detect the state of the stomach with high overall accuracy (>75%). The present study is the first demonstration of machine learning algorithms to detect the physiological state of the stomach and onset of retching, which could provide a methodology to diagnose GI diseases and symptoms such as nausea and vomiting.
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spelling pubmed-67998992019-10-25 Machine learning prediction of emesis and gastrointestinal state in ferrets Nanivadekar, Ameya C. Miller, Derek M. Fulton, Stephanie Wong, Liane Ogren, John Chitnis, Girish McLaughlin, Bryan Zhai, Shuyan Fisher, Lee E. Yates, Bill J. Horn, Charles C. PLoS One Research Article Although electrogastrography (EGG) could be a critical tool in the diagnosis of patients with gastrointestinal (GI) disease, it remains under-utilized. The lack of spatial and temporal resolution using current EGG methods presents a significant roadblock to more widespread usage. Human and preclinical studies have shown that GI myoelectric electrodes can record signals containing significantly more information than can be derived from abdominal surface electrodes. The current study sought to assess the efficacy of multi-electrode arrays, surgically implanted on the serosal surface of the GI tract, from gastric fundus-to-duodenum, in recording myoelectric signals. It also examines the potential for machine learning algorithms to predict functional states, such as retching and emesis, from GI signal features. Studies were performed using ferrets, a gold standard model for emesis testing. Our results include simultaneous recordings from up to six GI recording sites in both anesthetized and chronically implanted free-moving ferrets. Testing conditions to produce different gastric states included gastric distension, intragastric infusion of emetine (a prototypical emetic agent), and feeding. Despite the observed variability in GI signals, machine learning algorithms, including k-nearest neighbors and support vector machines, were able to detect the state of the stomach with high overall accuracy (>75%). The present study is the first demonstration of machine learning algorithms to detect the physiological state of the stomach and onset of retching, which could provide a methodology to diagnose GI diseases and symptoms such as nausea and vomiting. Public Library of Science 2019-10-18 /pmc/articles/PMC6799899/ /pubmed/31626659 http://dx.doi.org/10.1371/journal.pone.0223279 Text en © 2019 Nanivadekar et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Nanivadekar, Ameya C.
Miller, Derek M.
Fulton, Stephanie
Wong, Liane
Ogren, John
Chitnis, Girish
McLaughlin, Bryan
Zhai, Shuyan
Fisher, Lee E.
Yates, Bill J.
Horn, Charles C.
Machine learning prediction of emesis and gastrointestinal state in ferrets
title Machine learning prediction of emesis and gastrointestinal state in ferrets
title_full Machine learning prediction of emesis and gastrointestinal state in ferrets
title_fullStr Machine learning prediction of emesis and gastrointestinal state in ferrets
title_full_unstemmed Machine learning prediction of emesis and gastrointestinal state in ferrets
title_short Machine learning prediction of emesis and gastrointestinal state in ferrets
title_sort machine learning prediction of emesis and gastrointestinal state in ferrets
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6799899/
https://www.ncbi.nlm.nih.gov/pubmed/31626659
http://dx.doi.org/10.1371/journal.pone.0223279
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