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Networks of random trees as a model of neuronal connectivity
We provide an analysis of a randomly grown 2-d network which models the morphological growth of dendritic and axonal arbors. From the stochastic geometry of this model we derive a dynamic graph of potential synaptic connections. We estimate standard network parameters such as degree distribution, av...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800872/ https://www.ncbi.nlm.nih.gov/pubmed/31338567 http://dx.doi.org/10.1007/s00285-019-01406-8 |
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author | Ajazi, Fioralba Chavez–Demoulin, Valérie Turova, Tatyana |
author_facet | Ajazi, Fioralba Chavez–Demoulin, Valérie Turova, Tatyana |
author_sort | Ajazi, Fioralba |
collection | PubMed |
description | We provide an analysis of a randomly grown 2-d network which models the morphological growth of dendritic and axonal arbors. From the stochastic geometry of this model we derive a dynamic graph of potential synaptic connections. We estimate standard network parameters such as degree distribution, average shortest path length and clustering coefficient, considering all these parameters as functions of time. Our results show that even a simple model with just a few parameters is capable of representing a wide spectra of architecture, capturing properties of well-known models, such as random graphs or small world networks, depending on the time of the network development. The introduced model allows not only rather straightforward simulations but it is also amenable to a rigorous analysis. This provides a base for further study of formation of synaptic connections on such networks and their dynamics due to plasticity. |
format | Online Article Text |
id | pubmed-6800872 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-68008722019-11-01 Networks of random trees as a model of neuronal connectivity Ajazi, Fioralba Chavez–Demoulin, Valérie Turova, Tatyana J Math Biol Article We provide an analysis of a randomly grown 2-d network which models the morphological growth of dendritic and axonal arbors. From the stochastic geometry of this model we derive a dynamic graph of potential synaptic connections. We estimate standard network parameters such as degree distribution, average shortest path length and clustering coefficient, considering all these parameters as functions of time. Our results show that even a simple model with just a few parameters is capable of representing a wide spectra of architecture, capturing properties of well-known models, such as random graphs or small world networks, depending on the time of the network development. The introduced model allows not only rather straightforward simulations but it is also amenable to a rigorous analysis. This provides a base for further study of formation of synaptic connections on such networks and their dynamics due to plasticity. Springer Berlin Heidelberg 2019-07-24 2019 /pmc/articles/PMC6800872/ /pubmed/31338567 http://dx.doi.org/10.1007/s00285-019-01406-8 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Ajazi, Fioralba Chavez–Demoulin, Valérie Turova, Tatyana Networks of random trees as a model of neuronal connectivity |
title | Networks of random trees as a model of neuronal connectivity |
title_full | Networks of random trees as a model of neuronal connectivity |
title_fullStr | Networks of random trees as a model of neuronal connectivity |
title_full_unstemmed | Networks of random trees as a model of neuronal connectivity |
title_short | Networks of random trees as a model of neuronal connectivity |
title_sort | networks of random trees as a model of neuronal connectivity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6800872/ https://www.ncbi.nlm.nih.gov/pubmed/31338567 http://dx.doi.org/10.1007/s00285-019-01406-8 |
work_keys_str_mv | AT ajazifioralba networksofrandomtreesasamodelofneuronalconnectivity AT chavezdemoulinvalerie networksofrandomtreesasamodelofneuronalconnectivity AT turovatatyana networksofrandomtreesasamodelofneuronalconnectivity |