Cargando…

The draft genome of Actinia tenebrosa reveals insights into toxin evolution

Sea anemones have a wide array of toxic compounds (peptide toxins found in their venom) which have potential uses as therapeutics. To date, the majority of studies characterizing toxins in sea anemones have been restricted to species from the superfamily, Actinioidea. No highly complete draft genome...

Descripción completa

Detalles Bibliográficos
Autores principales: Surm, Joachim M., Stewart, Zachary K., Papanicolaou, Alexie, Pavasovic, Ana, Prentis, Peter J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802032/
https://www.ncbi.nlm.nih.gov/pubmed/31641475
http://dx.doi.org/10.1002/ece3.5633
_version_ 1783460720504995840
author Surm, Joachim M.
Stewart, Zachary K.
Papanicolaou, Alexie
Pavasovic, Ana
Prentis, Peter J.
author_facet Surm, Joachim M.
Stewart, Zachary K.
Papanicolaou, Alexie
Pavasovic, Ana
Prentis, Peter J.
author_sort Surm, Joachim M.
collection PubMed
description Sea anemones have a wide array of toxic compounds (peptide toxins found in their venom) which have potential uses as therapeutics. To date, the majority of studies characterizing toxins in sea anemones have been restricted to species from the superfamily, Actinioidea. No highly complete draft genomes are currently available for this superfamily, however, highlighting our limited understanding of the genes encoding toxins in this important group. Here we have sequenced, assembled, and annotated a draft genome for Actinia tenebrosa. The genome is estimated to be approximately 255 megabases, with 31,556 protein‐coding genes. Quality metrics revealed that this draft genome matches the quality and completeness of other model cnidarian genomes, including Nematostella, Hydra, and Acropora. Phylogenomic analyses revealed strong conservation of the Cnidaria and Hexacorallia core‐gene set. However, we found that lineage‐specific gene families have undergone significant expansion events compared with shared gene families. Enrichment analysis performed for both gene ontologies, and protein domains revealed that genes encoding toxins contribute to a significant proportion of the lineage‐specific genes and gene families. The results make clear that the draft genome of A. tenebrosa will provide insight into the evolution of toxins and lineage‐specific genes, and provide an important resource for the discovery of novel biological compounds.
format Online
Article
Text
id pubmed-6802032
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-68020322019-10-22 The draft genome of Actinia tenebrosa reveals insights into toxin evolution Surm, Joachim M. Stewart, Zachary K. Papanicolaou, Alexie Pavasovic, Ana Prentis, Peter J. Ecol Evol Original Research Sea anemones have a wide array of toxic compounds (peptide toxins found in their venom) which have potential uses as therapeutics. To date, the majority of studies characterizing toxins in sea anemones have been restricted to species from the superfamily, Actinioidea. No highly complete draft genomes are currently available for this superfamily, however, highlighting our limited understanding of the genes encoding toxins in this important group. Here we have sequenced, assembled, and annotated a draft genome for Actinia tenebrosa. The genome is estimated to be approximately 255 megabases, with 31,556 protein‐coding genes. Quality metrics revealed that this draft genome matches the quality and completeness of other model cnidarian genomes, including Nematostella, Hydra, and Acropora. Phylogenomic analyses revealed strong conservation of the Cnidaria and Hexacorallia core‐gene set. However, we found that lineage‐specific gene families have undergone significant expansion events compared with shared gene families. Enrichment analysis performed for both gene ontologies, and protein domains revealed that genes encoding toxins contribute to a significant proportion of the lineage‐specific genes and gene families. The results make clear that the draft genome of A. tenebrosa will provide insight into the evolution of toxins and lineage‐specific genes, and provide an important resource for the discovery of novel biological compounds. John Wiley and Sons Inc. 2019-09-18 /pmc/articles/PMC6802032/ /pubmed/31641475 http://dx.doi.org/10.1002/ece3.5633 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Surm, Joachim M.
Stewart, Zachary K.
Papanicolaou, Alexie
Pavasovic, Ana
Prentis, Peter J.
The draft genome of Actinia tenebrosa reveals insights into toxin evolution
title The draft genome of Actinia tenebrosa reveals insights into toxin evolution
title_full The draft genome of Actinia tenebrosa reveals insights into toxin evolution
title_fullStr The draft genome of Actinia tenebrosa reveals insights into toxin evolution
title_full_unstemmed The draft genome of Actinia tenebrosa reveals insights into toxin evolution
title_short The draft genome of Actinia tenebrosa reveals insights into toxin evolution
title_sort draft genome of actinia tenebrosa reveals insights into toxin evolution
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802032/
https://www.ncbi.nlm.nih.gov/pubmed/31641475
http://dx.doi.org/10.1002/ece3.5633
work_keys_str_mv AT surmjoachimm thedraftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT stewartzacharyk thedraftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT papanicolaoualexie thedraftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT pavasovicana thedraftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT prentispeterj thedraftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT surmjoachimm draftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT stewartzacharyk draftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT papanicolaoualexie draftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT pavasovicana draftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution
AT prentispeterj draftgenomeofactiniatenebrosarevealsinsightsintotoxinevolution