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The draft genome of Actinia tenebrosa reveals insights into toxin evolution
Sea anemones have a wide array of toxic compounds (peptide toxins found in their venom) which have potential uses as therapeutics. To date, the majority of studies characterizing toxins in sea anemones have been restricted to species from the superfamily, Actinioidea. No highly complete draft genome...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802032/ https://www.ncbi.nlm.nih.gov/pubmed/31641475 http://dx.doi.org/10.1002/ece3.5633 |
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author | Surm, Joachim M. Stewart, Zachary K. Papanicolaou, Alexie Pavasovic, Ana Prentis, Peter J. |
author_facet | Surm, Joachim M. Stewart, Zachary K. Papanicolaou, Alexie Pavasovic, Ana Prentis, Peter J. |
author_sort | Surm, Joachim M. |
collection | PubMed |
description | Sea anemones have a wide array of toxic compounds (peptide toxins found in their venom) which have potential uses as therapeutics. To date, the majority of studies characterizing toxins in sea anemones have been restricted to species from the superfamily, Actinioidea. No highly complete draft genomes are currently available for this superfamily, however, highlighting our limited understanding of the genes encoding toxins in this important group. Here we have sequenced, assembled, and annotated a draft genome for Actinia tenebrosa. The genome is estimated to be approximately 255 megabases, with 31,556 protein‐coding genes. Quality metrics revealed that this draft genome matches the quality and completeness of other model cnidarian genomes, including Nematostella, Hydra, and Acropora. Phylogenomic analyses revealed strong conservation of the Cnidaria and Hexacorallia core‐gene set. However, we found that lineage‐specific gene families have undergone significant expansion events compared with shared gene families. Enrichment analysis performed for both gene ontologies, and protein domains revealed that genes encoding toxins contribute to a significant proportion of the lineage‐specific genes and gene families. The results make clear that the draft genome of A. tenebrosa will provide insight into the evolution of toxins and lineage‐specific genes, and provide an important resource for the discovery of novel biological compounds. |
format | Online Article Text |
id | pubmed-6802032 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-68020322019-10-22 The draft genome of Actinia tenebrosa reveals insights into toxin evolution Surm, Joachim M. Stewart, Zachary K. Papanicolaou, Alexie Pavasovic, Ana Prentis, Peter J. Ecol Evol Original Research Sea anemones have a wide array of toxic compounds (peptide toxins found in their venom) which have potential uses as therapeutics. To date, the majority of studies characterizing toxins in sea anemones have been restricted to species from the superfamily, Actinioidea. No highly complete draft genomes are currently available for this superfamily, however, highlighting our limited understanding of the genes encoding toxins in this important group. Here we have sequenced, assembled, and annotated a draft genome for Actinia tenebrosa. The genome is estimated to be approximately 255 megabases, with 31,556 protein‐coding genes. Quality metrics revealed that this draft genome matches the quality and completeness of other model cnidarian genomes, including Nematostella, Hydra, and Acropora. Phylogenomic analyses revealed strong conservation of the Cnidaria and Hexacorallia core‐gene set. However, we found that lineage‐specific gene families have undergone significant expansion events compared with shared gene families. Enrichment analysis performed for both gene ontologies, and protein domains revealed that genes encoding toxins contribute to a significant proportion of the lineage‐specific genes and gene families. The results make clear that the draft genome of A. tenebrosa will provide insight into the evolution of toxins and lineage‐specific genes, and provide an important resource for the discovery of novel biological compounds. John Wiley and Sons Inc. 2019-09-18 /pmc/articles/PMC6802032/ /pubmed/31641475 http://dx.doi.org/10.1002/ece3.5633 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Research Surm, Joachim M. Stewart, Zachary K. Papanicolaou, Alexie Pavasovic, Ana Prentis, Peter J. The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
title | The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
title_full | The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
title_fullStr | The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
title_full_unstemmed | The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
title_short | The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
title_sort | draft genome of actinia tenebrosa reveals insights into toxin evolution |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802032/ https://www.ncbi.nlm.nih.gov/pubmed/31641475 http://dx.doi.org/10.1002/ece3.5633 |
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