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Analysis of interval‐grouped data in weed science: The binnednp Rcpp package

1. Weed scientists are usually interested in the study of the distribution and density functions of the random variable that relates weed emergence with environmental indices like the hydrothermal time (HTT). However, in many situations, experimental data are presented in a grouped way and, therefor...

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Autores principales: Barreiro‐Ures, Daniel, Francisco‐Fernández, Mario, Cao, Ricardo, Fraguela, Basilio B., Doallo, Ramón, González‐Andújar, José Luis, Reyes, Miguel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802074/
https://www.ncbi.nlm.nih.gov/pubmed/31641444
http://dx.doi.org/10.1002/ece3.5448
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author Barreiro‐Ures, Daniel
Francisco‐Fernández, Mario
Cao, Ricardo
Fraguela, Basilio B.
Doallo, Ramón
González‐Andújar, José Luis
Reyes, Miguel
author_facet Barreiro‐Ures, Daniel
Francisco‐Fernández, Mario
Cao, Ricardo
Fraguela, Basilio B.
Doallo, Ramón
González‐Andújar, José Luis
Reyes, Miguel
author_sort Barreiro‐Ures, Daniel
collection PubMed
description 1. Weed scientists are usually interested in the study of the distribution and density functions of the random variable that relates weed emergence with environmental indices like the hydrothermal time (HTT). However, in many situations, experimental data are presented in a grouped way and, therefore, the standard nonparametric kernel estimators cannot be computed. 2. Kernel estimators for the density and distribution functions for interval‐grouped data, as well as bootstrap confidence bands for these functions, have been proposed and implemented in the binnednp package. Analysis with different treatments can also be performed using a bootstrap approach and a Cramér‐von Mises type distance. Several bandwidth selection procedures were also implemented. This package also allows to estimate different emergence indices that measure the shape of the data distribution. The values of these indices are useful for the selection of the soil depth at which HTT should be measured which, in turn, would maximize the predictive power of the proposed methods. 3. This paper presents the functions of the package and provides an example using an emergence data set of Avena sterilis (wild oat). 4. The binnednp package provides investigators with a unique set of tools allowing the weed science research community to analyze interval‐grouped data.
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spelling pubmed-68020742019-10-22 Analysis of interval‐grouped data in weed science: The binnednp Rcpp package Barreiro‐Ures, Daniel Francisco‐Fernández, Mario Cao, Ricardo Fraguela, Basilio B. Doallo, Ramón González‐Andújar, José Luis Reyes, Miguel Ecol Evol Original Research 1. Weed scientists are usually interested in the study of the distribution and density functions of the random variable that relates weed emergence with environmental indices like the hydrothermal time (HTT). However, in many situations, experimental data are presented in a grouped way and, therefore, the standard nonparametric kernel estimators cannot be computed. 2. Kernel estimators for the density and distribution functions for interval‐grouped data, as well as bootstrap confidence bands for these functions, have been proposed and implemented in the binnednp package. Analysis with different treatments can also be performed using a bootstrap approach and a Cramér‐von Mises type distance. Several bandwidth selection procedures were also implemented. This package also allows to estimate different emergence indices that measure the shape of the data distribution. The values of these indices are useful for the selection of the soil depth at which HTT should be measured which, in turn, would maximize the predictive power of the proposed methods. 3. This paper presents the functions of the package and provides an example using an emergence data set of Avena sterilis (wild oat). 4. The binnednp package provides investigators with a unique set of tools allowing the weed science research community to analyze interval‐grouped data. John Wiley and Sons Inc. 2019-09-13 /pmc/articles/PMC6802074/ /pubmed/31641444 http://dx.doi.org/10.1002/ece3.5448 Text en © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Barreiro‐Ures, Daniel
Francisco‐Fernández, Mario
Cao, Ricardo
Fraguela, Basilio B.
Doallo, Ramón
González‐Andújar, José Luis
Reyes, Miguel
Analysis of interval‐grouped data in weed science: The binnednp Rcpp package
title Analysis of interval‐grouped data in weed science: The binnednp Rcpp package
title_full Analysis of interval‐grouped data in weed science: The binnednp Rcpp package
title_fullStr Analysis of interval‐grouped data in weed science: The binnednp Rcpp package
title_full_unstemmed Analysis of interval‐grouped data in weed science: The binnednp Rcpp package
title_short Analysis of interval‐grouped data in weed science: The binnednp Rcpp package
title_sort analysis of interval‐grouped data in weed science: the binnednp rcpp package
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802074/
https://www.ncbi.nlm.nih.gov/pubmed/31641444
http://dx.doi.org/10.1002/ece3.5448
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