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Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase

Several accessory proteins are required for the assembly of the metal centers in hydrogenases. In NiFe-hydrogenases, CO and CN(−) are coordinated to the Fe in the NiFe dinuclear cluster of the active center. Though these diatomic ligands are biosynthesized enzymatically, detail mechanisms of their b...

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Autores principales: Muraki, Norifumi, Ishii, Kentaro, Uchiyama, Susumu, Itoh, Satoru G., Okumura, Hisashi, Aono, Shigetoshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802093/
https://www.ncbi.nlm.nih.gov/pubmed/31646188
http://dx.doi.org/10.1038/s42003-019-0631-z
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author Muraki, Norifumi
Ishii, Kentaro
Uchiyama, Susumu
Itoh, Satoru G.
Okumura, Hisashi
Aono, Shigetoshi
author_facet Muraki, Norifumi
Ishii, Kentaro
Uchiyama, Susumu
Itoh, Satoru G.
Okumura, Hisashi
Aono, Shigetoshi
author_sort Muraki, Norifumi
collection PubMed
description Several accessory proteins are required for the assembly of the metal centers in hydrogenases. In NiFe-hydrogenases, CO and CN(−) are coordinated to the Fe in the NiFe dinuclear cluster of the active center. Though these diatomic ligands are biosynthesized enzymatically, detail mechanisms of their biosynthesis remain unclear. Here, we report the structural characterization of HypX responsible for CO biosynthesis to assemble the active site of NiFe hydrogenase. CoA is constitutionally bound in HypX. Structural characterization of HypX suggests that the formyl-group transfer will take place from N(10)-formyl-THF to CoA to form formyl-CoA in the N-terminal domain of HypX, followed by decarbonylation of formyl-CoA to produce CO in the C-terminal domain though the direct experimental results are not available yet. The conformation of CoA accommodated in the continuous cavity connecting the N- and C-terminal domains will interconvert between the extended and the folded conformations for HypX catalysis.
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spelling pubmed-68020932019-10-23 Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase Muraki, Norifumi Ishii, Kentaro Uchiyama, Susumu Itoh, Satoru G. Okumura, Hisashi Aono, Shigetoshi Commun Biol Article Several accessory proteins are required for the assembly of the metal centers in hydrogenases. In NiFe-hydrogenases, CO and CN(−) are coordinated to the Fe in the NiFe dinuclear cluster of the active center. Though these diatomic ligands are biosynthesized enzymatically, detail mechanisms of their biosynthesis remain unclear. Here, we report the structural characterization of HypX responsible for CO biosynthesis to assemble the active site of NiFe hydrogenase. CoA is constitutionally bound in HypX. Structural characterization of HypX suggests that the formyl-group transfer will take place from N(10)-formyl-THF to CoA to form formyl-CoA in the N-terminal domain of HypX, followed by decarbonylation of formyl-CoA to produce CO in the C-terminal domain though the direct experimental results are not available yet. The conformation of CoA accommodated in the continuous cavity connecting the N- and C-terminal domains will interconvert between the extended and the folded conformations for HypX catalysis. Nature Publishing Group UK 2019-10-18 /pmc/articles/PMC6802093/ /pubmed/31646188 http://dx.doi.org/10.1038/s42003-019-0631-z Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Muraki, Norifumi
Ishii, Kentaro
Uchiyama, Susumu
Itoh, Satoru G.
Okumura, Hisashi
Aono, Shigetoshi
Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
title Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
title_full Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
title_fullStr Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
title_full_unstemmed Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
title_short Structural characterization of HypX responsible for CO biosynthesis in the maturation of NiFe-hydrogenase
title_sort structural characterization of hypx responsible for co biosynthesis in the maturation of nife-hydrogenase
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6802093/
https://www.ncbi.nlm.nih.gov/pubmed/31646188
http://dx.doi.org/10.1038/s42003-019-0631-z
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