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High-fidelity optical diffraction tomography of multiple scattering samples

We propose an iterative reconstruction scheme for optical diffraction tomography that exploits the split-step non-paraxial (SSNP) method as the forward model in a learning tomography scheme. Compared with the beam propagation method (BPM) previously used in learning tomography (LT-BPM), the improved...

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Autores principales: Lim, Joowon, Ayoub, Ahmed B., Antoine, Elizabeth E., Psaltis, Demetri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6804780/
https://www.ncbi.nlm.nih.gov/pubmed/31645926
http://dx.doi.org/10.1038/s41377-019-0195-1
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author Lim, Joowon
Ayoub, Ahmed B.
Antoine, Elizabeth E.
Psaltis, Demetri
author_facet Lim, Joowon
Ayoub, Ahmed B.
Antoine, Elizabeth E.
Psaltis, Demetri
author_sort Lim, Joowon
collection PubMed
description We propose an iterative reconstruction scheme for optical diffraction tomography that exploits the split-step non-paraxial (SSNP) method as the forward model in a learning tomography scheme. Compared with the beam propagation method (BPM) previously used in learning tomography (LT-BPM), the improved accuracy of SSNP maximizes the information retrieved from measurements, relying less on prior assumptions about the sample. A rigorous evaluation of learning tomography based on SSNP (LT-SSNP) using both synthetic and experimental measurements confirms its superior performance compared with that of the LT-BPM. Benefiting from the accuracy of SSNP, LT-SSNP can clearly resolve structures that are highly distorted in the LT-BPM. A serious limitation for quantifying the reconstruction accuracy for biological samples is that the ground truth is unknown. To overcome this limitation, we describe a novel method that allows us to compare the performances of different reconstruction schemes by using the discrete dipole approximation to generate synthetic measurements. Finally, we explore the capacity of learning approaches to enable data compression by reducing the number of scanning angles, which is of particular interest in minimizing the measurement time.
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spelling pubmed-68047802019-10-23 High-fidelity optical diffraction tomography of multiple scattering samples Lim, Joowon Ayoub, Ahmed B. Antoine, Elizabeth E. Psaltis, Demetri Light Sci Appl Article We propose an iterative reconstruction scheme for optical diffraction tomography that exploits the split-step non-paraxial (SSNP) method as the forward model in a learning tomography scheme. Compared with the beam propagation method (BPM) previously used in learning tomography (LT-BPM), the improved accuracy of SSNP maximizes the information retrieved from measurements, relying less on prior assumptions about the sample. A rigorous evaluation of learning tomography based on SSNP (LT-SSNP) using both synthetic and experimental measurements confirms its superior performance compared with that of the LT-BPM. Benefiting from the accuracy of SSNP, LT-SSNP can clearly resolve structures that are highly distorted in the LT-BPM. A serious limitation for quantifying the reconstruction accuracy for biological samples is that the ground truth is unknown. To overcome this limitation, we describe a novel method that allows us to compare the performances of different reconstruction schemes by using the discrete dipole approximation to generate synthetic measurements. Finally, we explore the capacity of learning approaches to enable data compression by reducing the number of scanning angles, which is of particular interest in minimizing the measurement time. Nature Publishing Group UK 2019-09-11 /pmc/articles/PMC6804780/ /pubmed/31645926 http://dx.doi.org/10.1038/s41377-019-0195-1 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lim, Joowon
Ayoub, Ahmed B.
Antoine, Elizabeth E.
Psaltis, Demetri
High-fidelity optical diffraction tomography of multiple scattering samples
title High-fidelity optical diffraction tomography of multiple scattering samples
title_full High-fidelity optical diffraction tomography of multiple scattering samples
title_fullStr High-fidelity optical diffraction tomography of multiple scattering samples
title_full_unstemmed High-fidelity optical diffraction tomography of multiple scattering samples
title_short High-fidelity optical diffraction tomography of multiple scattering samples
title_sort high-fidelity optical diffraction tomography of multiple scattering samples
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6804780/
https://www.ncbi.nlm.nih.gov/pubmed/31645926
http://dx.doi.org/10.1038/s41377-019-0195-1
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